Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   V3I05_RS10055 Genome accession   NZ_CP145316
Coordinates   1982291..1984120 (-) Length   609 a.a.
NCBI ID   WP_343353523.1    Uniprot ID   -
Organism   Helicobacter mastomyrinus strain Hm-17     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1977291..1989120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I05_RS10040 (V3I05_10040) - 1978716..1979390 (-) 675 WP_300451027.1 response regulator -
  V3I05_RS10045 (V3I05_10045) - 1979380..1980837 (-) 1458 WP_295700384.1 HAMP domain-containing sensor histidine kinase -
  V3I05_RS10050 (V3I05_10050) - 1980834..1982294 (-) 1461 WP_295700387.1 hypothetical protein -
  V3I05_RS10055 (V3I05_10055) uvrC 1982291..1984120 (-) 1830 WP_343353523.1 excinuclease ABC subunit UvrC Machinery gene
  V3I05_RS10060 (V3I05_10060) - 1984110..1984565 (-) 456 WP_295700392.1 hypothetical protein -
  V3I05_RS10065 (V3I05_10065) - 1984557..1984793 (+) 237 WP_295700394.1 hypothetical protein -
  V3I05_RS10070 (V3I05_10070) nadB 1984797..1986233 (+) 1437 WP_343353525.1 L-aspartate oxidase -
  V3I05_RS10075 (V3I05_10075) - 1986986..1988161 (-) 1176 WP_343353526.1 glutathionylspermidine synthase family protein -
  V3I05_RS10080 (V3I05_10080) - 1988200..1988808 (-) 609 WP_343353527.1 UPF0323 family lipoprotein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70234.23 Da        Isoelectric Point: 9.8629

>NTDB_id=938435 V3I05_RS10055 WP_343353523.1 1982291..1984120(-) (uvrC) [Helicobacter mastomyrinus strain Hm-17]
MPPENPSLLFTLKHLPTQSGIYQYFDNAGNLLYIGKAKHLRNRIKSYFSIHNESISPKPNLSPRIGLMVSQIAQIHTLLT
NNEQDALILENSLIKSLKPKYNILLRDDKTYPYIYIDKSLHYPRFDITRQVLKSPKIQYFGPFASGARELLDSLYDVLPL
VQKKSCVKGKKACMFYAINKCLAPCEGKISTIEYAKLITQGIALLENKKELARILESKMQKLSTSLQFEEAAKIRDRIRK
ITQMKNQSIIDIRSGNYDVFTLVKDDESLNTHILMVLFIRNGRIVSSDFSLLHQDIYDDNLPELYTQALLNHYKNITPLM
PDEILIPHFAFADLVHLQQLISSQTQSHIKIIQPQKGKKRELLTLAYQNALEILRLHKQQHSDEPTLIALKELCALQRVP
YRIEVFDTSHHSGVHNVGGMIVYENNAFLSSHYRRYTLEGSDEYTQMRQMLERRAAKFESNPPPDLWLLDGGKAQIHIAC
EILQSVGANVDVVAIAKMKHNAKAYRAKGNALDILRTNQAEFKLKANDKRLQFCQKLRDEAHKYAITYHRYRKTKDTNKV
QIMGEKQYSKAQIKRLLEYFGSFQTLQNASQEQIQSVLKSRQFHTKESL

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=938435 V3I05_RS10055 WP_343353523.1 1982291..1984120(-) (uvrC) [Helicobacter mastomyrinus strain Hm-17]
ATGCCACCTGAAAATCCCTCTCTCCTTTTCACATTAAAGCATTTGCCTACACAATCAGGCATTTATCAATACTTTGATAA
TGCGGGAAATCTCCTCTATATAGGCAAGGCAAAGCATCTTAGAAATCGCATTAAAAGCTATTTTAGCATTCATAACGAAT
CTATCTCCCCAAAGCCCAATCTTAGCCCCAGAATCGGGCTTATGGTATCCCAAATAGCGCAGATTCACACGCTTTTAACC
AATAACGAACAAGACGCACTCATACTTGAAAACTCCCTTATCAAAAGCCTAAAGCCTAAATACAATATCCTTCTGCGCGA
TGATAAAACCTATCCGTATATTTATATTGATAAATCCCTCCACTACCCCCGCTTTGACATCACAAGACAAGTGCTAAAAT
CGCCTAAGATTCAGTATTTTGGACCATTTGCAAGTGGGGCTAGAGAATTGCTTGATAGCCTTTATGATGTGCTACCGCTT
GTGCAGAAAAAATCCTGTGTGAAAGGCAAAAAAGCTTGTATGTTTTATGCGATTAATAAATGTCTCGCCCCCTGTGAGGG
CAAAATCTCCACAATAGAATATGCTAAGCTCATCACGCAGGGCATTGCATTACTTGAAAATAAAAAAGAACTCGCACGTA
TTTTAGAATCAAAAATGCAAAAACTCTCTACTTCCTTGCAGTTTGAGGAAGCTGCTAAAATCCGCGATAGAATCCGCAAA
ATCACACAGATGAAAAATCAATCCATAATCGACATACGAAGCGGAAATTATGATGTATTTACCCTTGTTAAAGATGATGA
GAGCCTTAATACGCACATTCTTATGGTGCTCTTTATCCGCAATGGACGCATTGTCTCTAGCGATTTTTCACTGCTCCACC
AAGATATTTATGATGATAATCTCCCTGAACTCTACACACAAGCCCTGCTTAATCATTATAAAAATATAACGCCTCTAATG
CCTGATGAGATTCTTATCCCCCATTTTGCATTTGCAGACTTAGTGCATTTGCAGCAGCTCATTAGTAGCCAAACCCAAAG
CCATATTAAGATTATCCAGCCCCAAAAAGGCAAGAAAAGAGAGCTTCTTACCCTTGCCTATCAAAATGCCCTTGAGATAT
TGCGCCTCCATAAGCAGCAGCATAGCGATGAGCCAACTCTCATAGCCTTAAAAGAACTCTGCGCCCTCCAAAGAGTGCCC
TACAGAATTGAGGTGTTTGATACCTCTCATCATAGCGGGGTGCATAATGTAGGCGGTATGATTGTGTATGAAAATAATGC
CTTTCTCTCATCGCATTATCGGCGATATACCCTCGAAGGTAGCGATGAATACACGCAAATGCGGCAAATGCTTGAACGTA
GGGCAGCTAAGTTTGAATCTAATCCTCCGCCGGATTTATGGCTGCTTGATGGCGGAAAGGCACAAATTCATATCGCGTGT
GAGATTCTCCAAAGTGTGGGTGCAAATGTCGATGTGGTGGCGATTGCAAAAATGAAACATAATGCTAAAGCCTATCGGGC
AAAGGGCAATGCACTTGATATATTGCGCACAAACCAAGCGGAATTTAAACTAAAAGCAAATGACAAAAGACTACAATTCT
GCCAGAAGCTACGTGATGAGGCGCATAAATATGCTATTACCTATCATCGCTATAGGAAAACAAAAGACACAAATAAGGTG
CAAATAATGGGAGAGAAGCAATACAGCAAGGCACAGATAAAGCGACTTTTAGAATATTTTGGCTCATTTCAAACATTGCA
AAATGCCTCACAAGAGCAGATTCAATCCGTGCTAAAAAGCAGACAATTCCACACTAAAGAATCCCTATGA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(215-241)

GIY-YIG catalytic domain (GIY-YIG)

(19-102)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(391-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.174

97.865

0.501