Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   V3I05_RS04530 Genome accession   NZ_CP145316
Coordinates   913388..913798 (-) Length   136 a.a.
NCBI ID   WP_295698003.1    Uniprot ID   -
Organism   Helicobacter mastomyrinus strain Hm-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908388..918798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I05_RS04500 (V3I05_04500) - 908496..909470 (+) 975 WP_295697989.1 efflux RND transporter periplasmic adaptor subunit -
  V3I05_RS04505 (V3I05_04505) rpmB 909545..909733 (+) 189 WP_295697991.1 50S ribosomal protein L28 -
  V3I05_RS04510 (V3I05_04510) - 909742..910869 (+) 1128 WP_295697994.1 potassium channel protein -
  V3I05_RS04515 (V3I05_04515) argJ 910862..912076 (+) 1215 WP_295697997.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  V3I05_RS04520 (V3I05_04520) - 912192..912413 (+) 222 WP_343354183.1 YdcH family protein -
  V3I05_RS04525 (V3I05_04525) - 912636..913334 (+) 699 WP_343354185.1 endonuclease -
  V3I05_RS04530 (V3I05_04530) dprB 913388..913798 (-) 411 WP_295698003.1 Holliday junction resolvase RuvX Machinery gene
  V3I05_RS04535 (V3I05_04535) - 913808..914689 (-) 882 WP_343354188.1 DNA-processing protein DprA -
  V3I05_RS04540 (V3I05_04540) - 914689..915660 (-) 972 WP_295698008.1 divergent polysaccharide deacetylase family protein -
  V3I05_RS04545 (V3I05_04545) minE 915657..915902 (-) 246 WP_295698011.1 cell division topological specificity factor MinE -
  V3I05_RS04550 (V3I05_04550) minD 915899..916714 (-) 816 WP_300731295.1 septum site-determining protein MinD -
  V3I05_RS04555 (V3I05_04555) - 916982..917338 (-) 357 WP_300446385.1 hypothetical protein -
  V3I05_RS04560 (V3I05_04560) - 917616..917765 (-) 150 WP_300446387.1 hypothetical protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15323.94 Da        Isoelectric Point: 7.1660

>NTDB_id=938427 V3I05_RS04530 WP_295698003.1 913388..913798(-) (dprB) [Helicobacter mastomyrinus strain Hm-17]
MKLLACDVGLKRIGLAIYKAGIAFPLEPIIRFNRHQAASDLDKILCEYEIEQLIVGLPSGGESGHTEMMQRIKHFVGLLT
FKGEICFINEDYSSIEALESLAYMKRENRAKAQKDGRIDSLSACIILERYIQSIKC

Nucleotide


Download         Length: 411 bp        

>NTDB_id=938427 V3I05_RS04530 WP_295698003.1 913388..913798(-) (dprB) [Helicobacter mastomyrinus strain Hm-17]
ATGAAGTTACTAGCGTGTGATGTGGGGCTTAAACGTATAGGATTAGCGATATATAAAGCGGGTATCGCCTTTCCATTAGA
GCCTATTATACGCTTCAATCGACATCAAGCAGCAAGCGACCTCGATAAGATTCTGTGTGAATATGAGATAGAGCAGCTTA
TCGTAGGGCTACCAAGTGGCGGTGAATCAGGACACACAGAGATGATGCAGCGCATAAAGCATTTTGTGGGATTGCTGACC
TTTAAGGGCGAGATATGCTTTATCAATGAGGATTATAGTAGTATTGAGGCTTTGGAATCTCTAGCATATATGAAGCGGGA
GAATCGAGCAAAAGCACAAAAAGATGGCAGGATAGATTCCCTAAGTGCATGTATTATCCTAGAGCGGTATATACAATCTA
TCAAGTGCTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(1-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.788

97.059

0.522