Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SNR28_RS25215 Genome accession   NZ_CP145311
Coordinates   3353735..3355081 (-) Length   448 a.a.
NCBI ID   WP_375751679.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3348735..3360081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS25195 (SNR28_25165) - 3349357..3350217 (-) 861 WP_375751673.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  SNR28_RS25200 (SNR28_25170) - 3350289..3351809 (-) 1521 WP_375751674.1 AAA family ATPase -
  SNR28_RS25205 (SNR28_25175) aroB 3351844..3352929 (-) 1086 WP_375751676.1 3-dehydroquinate synthase -
  SNR28_RS25210 (SNR28_25180) aroK 3352955..3353473 (-) 519 WP_375751678.1 shikimate kinase AroK -
  SNR28_RS25215 (SNR28_25185) pilQ 3353735..3355081 (-) 1347 WP_375751679.1 type IV pilus secretin PilQ Machinery gene
  SNR28_RS25220 (SNR28_25190) - 3355074..3356087 (-) 1014 WP_375751680.1 pilus assembly protein PilP -
  SNR28_RS25225 (SNR28_25195) - 3356084..3356641 (-) 558 WP_375751682.1 PilN domain-containing protein -
  SNR28_RS25230 (SNR28_25200) pilM 3356638..3357621 (-) 984 WP_375751683.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49180.19 Da        Isoelectric Point: 4.5438

>NTDB_id=938422 SNR28_RS25215 WP_375751679.1 3353735..3355081(-) (pilQ) [Vibrio sp. HN007]
MNRLLMLLILTCLSLKPLVNAEPNTMIKMSENKRISVSFQDIPIRQALQILAEFNQFDIVVSDNVQGDISLRLEQVLWEQ
ALDVILQTNGLGKRTLDNIIMIAPEEDFGLRKQHETQMLKMEKELERLGSRVVRVHFAKASELADTLSSGQVGLSSRGSV
SVDARTNSLVIRDHEDNLNEISEMIAMLDIPIEQVQIEARLVTISEGDLEELGVRWGVAGSRGNIETGGSLEGLTSSPDN
LSLDDVLNVNLGATNPNASGIAFSVGSLSGVMLDLELSALQAESKAEIISSPRLITANKKTAYIEQGTEIPYLEAASSGA
TSVSFKKAVLSLEVTPQITPNHQIVLDLNVTQNSPGETVRTGFGEAVSIDTQRIGTQVLVNNNETIVLGGIYQYDIRTSV
DKVPVLAELPLIGSLFRRTYESRRKKELLIFVTPTVIEEQVMQKRSFE

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=938422 SNR28_RS25215 WP_375751679.1 3353735..3355081(-) (pilQ) [Vibrio sp. HN007]
ATGAATAGGCTTTTGATGCTACTAATTTTGACCTGCTTATCTTTAAAACCTTTGGTTAATGCAGAACCGAACACCATGAT
AAAGATGTCGGAAAACAAGCGAATCTCAGTGAGTTTTCAGGATATACCTATCCGGCAGGCACTTCAGATTCTGGCTGAGT
TCAATCAATTTGATATTGTGGTTTCTGATAATGTTCAGGGTGATATTTCGCTTAGGCTTGAGCAAGTTTTATGGGAACAA
GCACTGGATGTGATTTTGCAGACCAATGGATTAGGAAAGCGCACTTTAGACAACATTATTATGATTGCTCCTGAAGAGGA
TTTTGGGCTGAGAAAGCAACATGAAACTCAAATGCTTAAAATGGAAAAAGAGTTAGAGAGGTTAGGTTCAAGAGTAGTTA
GAGTTCATTTTGCCAAGGCCTCTGAACTGGCTGACACCTTGTCATCTGGGCAAGTAGGGCTCTCTTCACGAGGTTCTGTT
TCTGTCGATGCCAGAACCAACTCTCTGGTAATAAGAGACCATGAGGACAATTTGAATGAAATAAGTGAAATGATTGCGAT
GTTAGATATTCCTATTGAACAGGTGCAAATAGAGGCTCGTTTAGTAACGATTAGTGAAGGGGATCTGGAAGAGCTTGGTG
TTCGATGGGGTGTGGCAGGTAGTCGAGGGAATATTGAGACAGGAGGTTCACTGGAGGGGCTTACTTCAAGTCCGGACAAC
CTTTCTTTAGATGATGTACTCAATGTGAACTTAGGTGCAACGAATCCTAATGCTTCTGGAATTGCCTTTTCAGTCGGATC
ATTATCTGGAGTCATGCTTGACCTTGAACTGTCGGCACTACAAGCAGAGTCAAAAGCGGAAATCATTTCTAGTCCAAGGC
TGATCACAGCAAATAAGAAAACAGCATATATAGAGCAAGGAACAGAGATCCCTTATCTGGAAGCGGCTTCGAGCGGGGCA
ACATCTGTCTCTTTCAAAAAAGCAGTCTTAAGTCTGGAGGTCACTCCTCAAATAACACCAAATCACCAAATAGTGCTCGA
CTTAAACGTTACTCAAAACAGCCCTGGAGAGACAGTTCGAACAGGGTTTGGCGAAGCTGTTTCTATCGATACCCAGAGAA
TAGGTACTCAGGTTTTAGTGAACAACAACGAAACCATTGTGCTTGGTGGGATATACCAATATGACATTAGAACTTCAGTG
GATAAGGTTCCTGTGTTGGCAGAATTACCTTTAATCGGGAGTTTATTCCGTAGAACTTATGAAAGCAGACGTAAAAAAGA
ACTGCTTATATTTGTTACTCCAACGGTGATTGAAGAACAAGTTATGCAAAAAAGATCTTTTGAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(131-194)

Bacterial type II and III secretion system protein (Secretin)

(279-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

59.294

94.866

0.562
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

59.294

94.866

0.562
  pilQ Vibrio campbellii strain DS40M4

58.237

96.205

0.56
  pilQ Legionella pneumophila strain ERS1305867

44.203

92.411

0.408
  pilQ Legionella pneumophila strain Lp02

44.203

92.411

0.408
  comE Haemophilus influenzae Rd KW20

42.263

96.652

0.408
  comQ Acinetobacter baylyi ADP1

40.625

100

0.406
  pilQ Pseudomonas aeruginosa PAK

39.52

100

0.404
  comE Haemophilus influenzae 86-028NP

41.339

96.652

0.4
  pilQ Acinetobacter baumannii D1279779

36.717

100

0.379
  pilQ Acinetobacter baumannii strain A118

36.717

100

0.379