Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   SNR28_RS23705 Genome accession   NZ_CP145311
Coordinates   3049476..3049994 (-) Length   172 a.a.
NCBI ID   WP_375751349.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3044476..3054994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS23685 (SNR28_23660) rpsP 3044989..3045237 (-) 249 WP_275130227.1 30S ribosomal protein S16 -
  SNR28_RS23690 (SNR28_23665) ffh 3045577..3046977 (-) 1401 WP_375751345.1 signal recognition particle protein -
  SNR28_RS23695 (SNR28_23670) - 3047167..3047967 (+) 801 WP_375751346.1 inner membrane protein YpjD -
  SNR28_RS23700 (SNR28_23675) - 3048053..3049321 (+) 1269 WP_375751347.1 HlyC/CorC family transporter -
  SNR28_RS23705 (SNR28_23680) luxS 3049476..3049994 (-) 519 WP_375751349.1 S-ribosylhomocysteine lyase Regulator
  SNR28_RS23710 (SNR28_23685) gshA 3050040..3051617 (-) 1578 WP_375751351.1 glutamate--cysteine ligase -
  SNR28_RS23715 (SNR28_23690) - 3051738..3054590 (-) 2853 WP_375751352.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19040.74 Da        Isoelectric Point: 4.5338

>NTDB_id=938419 SNR28_RS23705 WP_375751349.1 3049476..3049994(-) (luxS) [Vibrio sp. HN007]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFCAPNKDILSERGIHTLEHLYAGFMRAHLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQRVADAWVAAMEDVLKVEGQNKIPELNEYQCGTYEMHSLEDAKAIAQGILEAGVSVNKNDDLA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=938419 SNR28_RS23705 WP_375751349.1 3049476..3049994(-) (luxS) [Vibrio sp. HN007]
ATGCCATTACTGGACAGTTTTACAGTTGATCACACTCGTATGAATGCACCAGCTGTACGTGTAGCTAAAACAATGCAAAC
ACCTAAAGGTGACACAATTACGGTGTTTGACCTACGTTTCTGTGCACCAAACAAAGATATTCTTTCTGAGCGAGGTATTC
ACACTCTGGAACATCTATACGCTGGATTTATGCGTGCACACCTGAATGGTAGCGATGTAGAAATTATCGATATTTCTCCT
ATGGGTTGTCGTACAGGTTTTTACATGAGCCTGATTGGCACACCTACCGAGCAACGTGTCGCTGATGCCTGGGTTGCTGC
AATGGAAGATGTCTTGAAGGTTGAAGGCCAAAACAAAATTCCTGAGCTGAACGAGTATCAGTGCGGTACATATGAAATGC
ACTCTCTGGAAGATGCAAAGGCTATCGCTCAGGGAATTCTTGAAGCAGGTGTTTCTGTAAACAAGAACGATGATCTGGCA
CTGCCTGAGTCTATGCTTCAGGAACTGAAAGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855