Detailed information NTG0938418

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SNR28_RS23575
• Genome accession: NZ_CP145311
• Coordinates: 3025041..3026015 (-)
• Length: 324 a.a.
• NCBI ID: WP_375751321.1
• Uniprot ID: -
• Organism: Vibrio sp. HN007
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3020041..3031015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SNR28_RS23555 (SNR28_23530)	btuF	3020249..3021076 (+)	828	WP_375754160.1	vitamin B12 ABC transporter substrate-binding protein BtuF	-
SNR28_RS23560 (SNR28_23535)	-	3021171..3021791 (+)	621	WP_375751317.1	TRIC cation channel family protein	-
SNR28_RS23565 (SNR28_23540)	-	3021842..3022321 (-)	480	WP_375751318.1	CinA family protein	-
SNR28_RS23570 (SNR28_23545)	mutS	3022411..3024978 (+)	2568	WP_375751320.1	DNA mismatch repair protein MutS	-
SNR28_RS23575 (SNR28_23550)	rpoS	3025041..3026015 (-)	975	WP_375751321.1	RNA polymerase sigma factor RpoS	Regulator
SNR28_RS23580 (SNR28_23555)	-	3026087..3027028 (-)	942	WP_375751322.1	peptidoglycan DD-metalloendopeptidase family protein	-
SNR28_RS23585 (SNR28_23560)	-	3027033..3027659 (-)	627	WP_375751323.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
SNR28_RS23590 (SNR28_23565)	surE	3027665..3028405 (-)	741	WP_375751324.1	5'/3'-nucleotidase SurE	-
SNR28_RS23595 (SNR28_23570)	truD	3028447..3029493 (-)	1047	WP_375751325.1	tRNA pseudouridine(13) synthase TruD	-
SNR28_RS23600 (SNR28_23575)	ispF	3029497..3029973 (-)	477	WP_375751326.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SNR28_RS23605 (SNR28_23580)	ispD	3029970..3030620 (-)	651	WP_375754161.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
SNR28_RS23610 (SNR28_23585)	ftsB	3030684..3030959 (-)	276	WP_375754162.1	cell division protein FtsB	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37031.00 Da
• Isoelectric Point: 4.7224

>NTDB_id=938418 SNR28_RS23575 WP_375751321.1 3025041..3026015(-) (rpoS) [Vibrio sp. HN007]
MSMSNTVTKVEEFDINNAALEGALENETVVEQPEAKEEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEDIAQTLDKPVSDVSKMLRLNERVSSVDTPIGGEGEKALLDIIPDVNHSDPEVS
TQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNMESLFD
VEQS

Nucleotide

• Length: 975 bp

>NTDB_id=938418 SNR28_RS23575 WP_375751321.1 3025041..3026015(-) (rpoS) [Vibrio sp. HN007]
ATGAGTATGAGCAATACAGTAACTAAAGTCGAAGAGTTTGACATTAATAATGCGGCATTGGAAGGCGCATTAGAAAATGA
AACTGTTGTAGAACAACCTGAAGCAAAAGAAGAATTTGATGCATCTTCTAAAAGCTTAGATGCCACACAACTCTATCTTG
GTGAAATTGGTTTTTCACCGTTATTAACCGCAGAAGAAGAAGTTCTTTATGCCCGCCGAGCACTACGAGGTGATGAGGCT
GCGCGTAAAAGAATGATCGAAAGTAATTTACGTCTCGTCGTTAAAATCTCACGCCGCTACAGCAATCGTGGTCTTGCTCT
TCTCGATCTAATCGAAGAAGGTAATCTAGGTCTGATCCGTGCTGTAGAGAAGTTTGACCCTGAAAGAGGTTTCCGTTTCT
CTACCTATGCGACCTGGTGGATTCGACAGACAATCGAACGTGCTCTGATGAACCAGACACGTACAATCCGACTACCAATT
CATGTCGTTAAAGAACTCAATATTTACCTTCGTACTGCTCGTGAGCTGTCTCAGAAACTTGATCATGAGCCAACTGCTGA
AGATATTGCACAGACACTGGATAAACCAGTAAGTGATGTCAGCAAGATGCTGCGTCTGAATGAACGTGTAAGCTCAGTTG
ATACACCAATTGGTGGTGAAGGTGAAAAAGCACTGTTGGATATCATTCCTGATGTAAACCATTCTGACCCTGAAGTTTCA
ACTCAGGACGATGATATCAAGAGCTCATTAATCCATTGGCTGGATGAGCTAAACCCTAAACAGAAAGAAGTATTGGCAAG
ACGCTTTGGTCTGCTTGGATACGAGCCATCAACGTTAGAAGAAGTTGGACGTGAAATTAATCTGACTCGTGAGCGAGTTC
GCCAGATTCAGGTAGAAGGTTTGCGTCGACTTAGAGAAATACTGATGAAGCAGGGGTTGAATATGGAATCTCTGTTTGAT
GTAGAGCAATCATAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.483	100	0.858