Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   SNR28_RS20765 Genome accession   NZ_CP145311
Coordinates   2432086..2433513 (-) Length   475 a.a.
NCBI ID   WP_375750576.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2427086..2438513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS20730 (SNR28_20715) moaE 2427800..2428255 (-) 456 WP_375750565.1 molybdopterin synthase catalytic subunit MoaE -
  SNR28_RS20735 (SNR28_20720) moaD 2428257..2428502 (-) 246 WP_375750567.1 molybdopterin synthase sulfur carrier subunit -
  SNR28_RS20740 (SNR28_20725) moaC 2428499..2428978 (-) 480 WP_375750568.1 cyclic pyranopterin monophosphate synthase MoaC -
  SNR28_RS20745 (SNR28_20730) moaB 2428984..2429496 (-) 513 WP_375750570.1 molybdenum cofactor biosynthesis protein B -
  SNR28_RS20750 (SNR28_20735) moaA 2429553..2430542 (-) 990 WP_375750572.1 GTP 3',8-cyclase MoaA -
  SNR28_RS20755 (SNR28_20740) - 2430838..2431725 (+) 888 WP_375750574.1 YvcK family protein -
  SNR28_RS20760 (SNR28_20745) - 2431722..2432063 (-) 342 WP_375750575.1 Hpt domain-containing protein -
  SNR28_RS20765 (SNR28_20750) luxO 2432086..2433513 (-) 1428 WP_375750576.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  SNR28_RS20770 (SNR28_20755) uvrB 2433788..2435818 (-) 2031 WP_375750579.1 excinuclease ABC subunit UvrB -
  SNR28_RS20780 (SNR28_20765) - 2436589..2437818 (+) 1230 WP_375750580.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 52450.88 Da        Isoelectric Point: 5.6827

>NTDB_id=938413 SNR28_RS20765 WP_375750576.1 2432086..2433513(-) (luxO) [Vibrio sp. HN007]
MSTSNSNQRSKHLLMVEDTASVAALYRSFLMPLGIDIEIVGTGKDAIESVNRKIPDLILLDLRLPDMTGMDVLYSVKQDH
PDVPVIFMTAHGSIDTAVEAMQHGAQDFLIKPCEADRLRVTVNNAIRKATKLKTDGGSEIKGNNNYQGFIGSSHTMQSVY
KTIDSAAASKASIFITGESGTGKEVCAEAIHAASRRRDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATEREGAAELA
NGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSHMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPL
RERGEDVVEIAYSLLGFMSLEEGKDFARFSEDVVKRFVNYEWPGNVRQLQNVLRNAVVLNHGKEITLSMLPPPLNQPSTK
IALANLDSSAIGKSDEESTKMLPSDVSPLWLVEKSTIELAIEAFDGNIPKAANALEVSPSTIYRKIQSWTKLSEQ

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=938413 SNR28_RS20765 WP_375750576.1 2432086..2433513(-) (luxO) [Vibrio sp. HN007]
ATGAGTACTTCAAATTCAAATCAACGCTCTAAACACCTGTTAATGGTGGAAGATACGGCTTCTGTCGCTGCGCTTTATCG
TTCTTTTCTCATGCCTTTAGGTATCGATATTGAGATAGTCGGAACAGGTAAAGATGCTATAGAAAGTGTTAATCGCAAGA
TTCCTGACTTAATTTTGCTCGACCTTAGATTGCCCGATATGACGGGGATGGATGTGCTTTATAGCGTAAAGCAGGATCAC
CCTGACGTTCCGGTTATATTTATGACAGCGCACGGCTCTATTGATACTGCCGTTGAAGCGATGCAGCACGGTGCGCAAGA
CTTTCTAATAAAACCTTGTGAAGCGGACCGCCTGCGGGTAACGGTCAACAACGCGATCCGAAAAGCAACGAAGCTGAAAA
CGGACGGTGGTAGTGAAATTAAAGGTAACAATAACTACCAGGGTTTCATCGGTAGTAGCCACACCATGCAGTCTGTATAC
AAAACCATAGACTCCGCCGCAGCCAGTAAAGCCAGCATCTTTATTACTGGTGAAAGTGGTACAGGTAAAGAGGTGTGTGC
AGAAGCAATTCATGCCGCCAGTAGGCGTCGTGACAAGCCATTTATCGCGATTAACTGTGCTGCAATACCAAAAGACCTGA
TAGAAAGCGAACTGTTTGGTCATGTTAAAGGGGCCTTTACTGGTGCGGCAACAGAGCGAGAAGGGGCTGCAGAGCTTGCT
AACGGTGGAACCTTGTTCCTTGATGAACTGTGTGAAATGGACCTAGATCTTCAGACAAAGCTACTTAGGTTTATTCAGAC
GGGTACTTTCCAGAAAGTGGGTTCGTCACATATGAAGAGTGTGGATGTAAGATTTGTCTGCGCAACCAACAGAGACCCTT
GGAAAGAGGTACAGGAAGGGCGGTTCCGTGAAGACCTTTACTACAGACTGTATGTTATACCTTTGCATCTACCACCATTG
AGAGAACGTGGCGAAGATGTGGTTGAGATTGCGTACTCGCTGCTTGGATTTATGTCCCTCGAAGAAGGCAAAGATTTTGC
GAGATTTTCTGAAGATGTTGTAAAGCGATTTGTGAACTACGAATGGCCTGGCAATGTGCGTCAATTGCAAAATGTTCTTC
GAAATGCCGTGGTGTTAAATCATGGAAAGGAGATCACACTTAGCATGTTACCTCCACCACTTAACCAACCTAGCACAAAA
ATTGCATTAGCTAATTTAGATAGTTCAGCTATTGGGAAATCAGATGAAGAGTCAACCAAAATGTTGCCTTCGGATGTTTC
CCCTTTGTGGTTGGTTGAAAAAAGTACAATAGAACTAGCAATCGAAGCTTTTGATGGCAACATCCCTAAAGCTGCGAATG
CTCTTGAAGTCAGCCCATCGACGATTTACAGAAAAATTCAAAGCTGGACGAAACTTTCAGAACAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(150-315)

Bacterial regulatory protein, Fis family (HTH_8)

(429-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

80.44

95.789

0.771