Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   SNR28_RS17250 Genome accession   NZ_CP145311
Coordinates   1623520..1624944 (-) Length   474 a.a.
NCBI ID   WP_375753898.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1618520..1629944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS17225 (SNR28_17215) - 1619337..1619987 (+) 651 WP_375753893.1 thiopurine S-methyltransferase -
  SNR28_RS17230 (SNR28_17220) purT 1620109..1621284 (-) 1176 WP_375753894.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  SNR28_RS17235 (SNR28_17225) cdd 1621424..1622311 (-) 888 WP_375753895.1 cytidine deaminase -
  SNR28_RS17240 (SNR28_17230) - 1622452..1623144 (-) 693 WP_375753896.1 LrgB family protein -
  SNR28_RS17245 (SNR28_17235) - 1623141..1623515 (-) 375 WP_375753897.1 CidA/LrgA family protein -
  SNR28_RS17250 (SNR28_17240) sbcB 1623520..1624944 (-) 1425 WP_375753898.1 exodeoxyribonuclease I Machinery gene
  SNR28_RS17255 (SNR28_17245) - 1625519..1626202 (+) 684 WP_375753899.1 hypothetical protein -
  SNR28_RS17260 (SNR28_17250) - 1626266..1626856 (+) 591 WP_375753900.1 phage tail protein -
  SNR28_RS17265 (SNR28_17255) - 1626868..1627467 (+) 600 WP_375753901.1 phage tail protein -
  SNR28_RS17270 (SNR28_17260) - 1627595..1628293 (-) 699 WP_375753902.1 NAD(P)H-binding protein -
  SNR28_RS17275 (SNR28_17265) - 1628761..1629714 (+) 954 WP_375753903.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54714.99 Da        Isoelectric Point: 5.0221

>NTDB_id=938409 SNR28_RS17250 WP_375753898.1 1623520..1624944(-) (sbcB) [Vibrio sp. HN007]
MQNEHSPTFFWFDYETWGTSPATDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAQNQGLPEP
EFIRRIHQELSVPNTTSLGYNSIRFDDEVTRYTLYRNFFDPYAWSWQNGNSRWDLLDVMRTCYALRPEGINWPTKEDGTP
SFKLEQLSVENGIEHENAHDAMADVIATIELAKKLKAAQPKLFEYLYQMRHKRKLNELIDIVNLTPLVHVSGMFGVECSN
TSWIVPVAWHPKNQNAVICINLAKDISPILELDGDMLKERLYTRHSELSEDELPVPVKLIHINKCPILAPAKTLTAENAE
QIGIDREKCLKNLATIKQHPEIREKLIELYQHEREFENKGNVDTMLYDGFFSPSDKASIDIIRQTAPEHLAALDISYSDP
RIEPLLFRYRARNFPSTLSETEQVKWTNHCRDYFESQLPDYMLNLENLAHEHESDEKKIAILKSVYKYVENLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=938409 SNR28_RS17250 WP_375753898.1 1623520..1624944(-) (sbcB) [Vibrio sp. HN007]
ATGCAAAACGAACACTCACCTACATTCTTCTGGTTCGATTATGAAACCTGGGGAACAAGTCCTGCTACTGACAGGCCAAG
CCAGTTTGCTGGTGTTCGTACTGATATGGATTTCAACATTATTGGTGAGCCCCTAGTTATCTATTGTCAGCCACCAGCAG
ATTACCTACCTTCACCAGAAGCCGCATTAATTACCGGAATCACACCGCAAAAGGCGCAAAATCAGGGACTGCCCGAGCCA
GAGTTTATTCGCAGAATACATCAGGAACTTTCTGTCCCGAATACCACTAGCCTTGGCTACAACAGCATTCGATTTGATGA
CGAAGTCACCCGATATACGCTTTATCGCAACTTCTTTGACCCCTATGCCTGGAGTTGGCAGAACGGTAACTCCCGATGGG
ATCTGCTTGATGTAATGCGAACCTGTTACGCACTTCGCCCGGAAGGAATTAACTGGCCGACGAAAGAGGACGGCACACCC
AGCTTCAAGCTGGAACAGCTTTCGGTCGAAAATGGTATCGAACACGAAAATGCCCATGATGCAATGGCCGATGTCATCGC
CACCATAGAGCTAGCTAAAAAACTAAAAGCCGCACAGCCTAAACTGTTCGAGTACCTATATCAGATGCGCCACAAACGTA
AGTTAAATGAGCTTATTGATATCGTTAACCTGACTCCTCTAGTTCATGTTTCCGGAATGTTCGGTGTTGAATGCTCTAAC
ACGAGTTGGATTGTTCCTGTTGCGTGGCACCCGAAGAATCAGAATGCCGTAATCTGTATCAATCTGGCAAAAGACATCTC
ACCTATCCTTGAGCTTGATGGCGATATGCTCAAAGAACGTCTGTATACCAGACACTCTGAGTTAAGTGAAGATGAACTCC
CTGTTCCGGTTAAGCTGATTCATATCAACAAGTGCCCTATTCTTGCACCCGCGAAAACCCTGACTGCAGAGAATGCAGAA
CAGATTGGTATCGATCGTGAAAAATGTCTTAAGAACCTGGCAACGATCAAACAACATCCAGAGATTCGCGAAAAACTGAT
CGAGCTTTATCAACATGAGCGTGAGTTCGAGAACAAAGGAAATGTAGATACCATGCTTTACGACGGTTTCTTCTCACCAT
CAGATAAGGCTTCTATAGATATAATCCGACAGACTGCGCCTGAGCATCTGGCTGCTTTGGATATCTCGTATTCAGACCCT
CGTATCGAACCTCTTCTATTTAGATATCGTGCGAGAAACTTTCCATCGACGTTAAGTGAAACAGAACAGGTTAAATGGAC
AAATCACTGCAGAGATTACTTTGAGTCTCAACTACCTGATTACATGTTAAATTTGGAGAATTTAGCCCATGAGCACGAGT
CCGATGAGAAGAAAATAGCCATACTAAAGTCTGTCTACAAATACGTAGAGAACCTTGTATCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

73.996

99.789

0.738