Detailed information NTG0938402

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: SNR28_RS11870
• Genome accession: NZ_CP145311
• Coordinates: 497167..500559 (-)
• Length: 1130 a.a.
• NCBI ID: WP_375752659.1
• Uniprot ID: -
• Organism: Vibrio sp. HN007
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 492167..505559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SNR28_RS11855 (SNR28_11840)	-	492706..493728 (-)	1023	WP_375752653.1	ABC transporter permease	-
SNR28_RS11860 (SNR28_11845)	-	493731..494717 (-)	987	WP_375752655.1	ABC transporter permease	-
SNR28_RS11865 (SNR28_11850)	-	494877..496550 (-)	1674	WP_375752657.1	ABC transporter substrate-binding protein	-
SNR28_RS11870 (SNR28_11855)	chiS	497167..500559 (-)	3393	WP_375752659.1	response regulator	Regulator
SNR28_RS11875 (SNR28_11860)	rsmC	500707..501729 (-)	1023	WP_375752661.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
SNR28_RS11880 (SNR28_11865)	-	501816..502901 (-)	1086	WP_375752663.1	AI-2E family transporter	-
SNR28_RS11885 (SNR28_11870)	hemL	503305..504594 (-)	1290	WP_375752665.1	glutamate-1-semialdehyde 2,1-aminomutase	-
SNR28_RS11890 (SNR28_11875)	erpA	504840..505181 (+)	342	WP_375752666.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1130 a.a.
• Molecular weight: 127259.51 Da
• Isoelectric Point: 5.9338

>NTDB_id=938402 SNR28_RS11870 WP_375752659.1 497167..500559(-) (chiS) [Vibrio sp. HN007]
MRRRMLKKQKHILFNRLRNTLMVAFLILSLVPLTVIALFFLNSHSQDLQEQSHSYLISVRETKRQQIQDYIDAKESEVMG
FVRSELAYASGGRFYGLVNAFRSLGADIESARNNAQSRYVEGSGNQIANPVTRNSDNYTGSERYRLLHKRYHWAFIELLK
RSDFDDILLVDMEGNVTYSVRKNAYYGTNLLDGKFKSSNLGKTFFNIRQTLGTEQNEPEDHIPVAMSDFVKNDDTSYAWF
AAPIVQQGFLHSYALLRLPIEGITQLVEDDNTSAEILVAGPDLTPRSQHLTQDVIDNHASILRSAIEGNTEVKTYENQDG
QKIIAALTPIPMKGTHWAISVQLSEDEAHARIHQLEKVFILAMLLASALVIIASHIFSNFITAPLLRLTWAAEKVSAGDW
DEPVINTDRSDEIGRLAVSFERMQRSIREKILTIRKQNKELEENLKVIQQQNNELQLADKLKDEFLATTSHELRTPLHGM
IGIAEALSAGASGSVPANQKYQLDIIINSGQRLANLVDDLLDYHKMRYGSLEISHKATDLFHATSIVLQLSTHLIGKKRI
RIINQLPIELPPVVADPQRLEQVLYNLVGNAIKYTDEGKIVISAETLEHQMRIQIVDTGQGIPAEYLEHIFEPLVQAGGK
SASYKQGAGLGLSISRQLIELMGGSLYVSSQPEVGTTFSFTLPLAGENVIPNESEEAQLHYQLPSVQALPDTPSDIVQEN
FDGPLVIAADDEPVNLSVLKNFLALEGFRVKTATKGTEVLQLVDEEKPDIVLLDIMMPGLNGYEVCRSIRTEYSHTELPI
VMLTALNQAEDRIEGFKSGANDYLSKPFNRLELAARIHVHISASQTEQEKQRNHQLKLEIEKRTKAENELLATQKRLIEQ
LDGAPEAILCLQDEQEIRFANEAASVLFRRTAEQLKRSNAEEVIATKYLNSSQEHYCGDIEIFSGTQRLHVSGDIIRLPK
SSGISTMFIFDIDGEVNTHRVRKLETAVEALSSYAFEGGSDNLDKLKQLGDEFKGIADKATGNTKDKQTLIRETLVAAMT
TALSYWEHTTGKTKFNFAEESGLWKVYLDRSTLQTRTLDKYLRVETVPKTPRWRTVLSSIDFILEHCHEESGQRKELEQI
KQRLNRLVTS

Nucleotide

• Length: 3393 bp

>NTDB_id=938402 SNR28_RS11870 WP_375752659.1 497167..500559(-) (chiS) [Vibrio sp. HN007]
ATGCGCAGAAGAATGCTGAAAAAACAGAAACACATTTTATTCAATCGTCTCCGCAACACCTTAATGGTGGCATTTTTAAT
CCTTAGCCTTGTTCCCCTGACCGTTATCGCCTTGTTTTTTCTGAACTCTCATAGTCAGGATTTACAAGAGCAAAGCCACT
CCTATCTGATATCAGTCAGAGAAACTAAAAGGCAACAAATACAAGACTATATCGATGCTAAAGAGTCGGAAGTTATGGGC
TTTGTACGCTCGGAATTAGCCTATGCCAGCGGGGGGCGATTTTATGGCCTTGTAAATGCGTTCCGAAGTTTGGGCGCAGA
TATTGAGAGCGCTCGCAATAATGCTCAATCAAGATATGTCGAAGGTTCAGGTAATCAAATTGCCAATCCTGTAACCAGAA
ATTCAGATAATTATACCGGTAGTGAACGCTATAGACTGCTGCATAAACGTTATCACTGGGCATTTATTGAGTTGTTAAAA
AGGTCGGATTTTGACGACATTCTTCTTGTGGACATGGAAGGAAACGTCACCTACTCGGTTCGAAAAAATGCCTATTACGG
AACAAACCTACTGGATGGCAAGTTTAAGAGCTCCAATCTTGGAAAGACCTTTTTCAACATAAGACAAACTCTTGGAACAG
AGCAAAATGAGCCTGAAGATCATATCCCGGTTGCCATGTCAGACTTTGTTAAAAACGATGATACGAGTTATGCCTGGTTC
GCAGCCCCTATCGTGCAACAAGGCTTTCTGCATAGCTACGCGTTACTGCGACTACCTATTGAAGGCATTACCCAGCTCGT
AGAAGATGACAATACATCTGCTGAAATTCTCGTAGCAGGCCCGGATCTGACGCCTCGGTCTCAGCACCTAACTCAAGATG
TCATTGATAACCATGCGAGTATCCTGCGCTCTGCTATCGAAGGAAATACTGAGGTAAAAACATACGAAAATCAGGATGGT
CAAAAAATCATTGCTGCGCTGACACCTATACCGATGAAAGGTACGCACTGGGCTATCTCTGTTCAGTTGTCTGAGGATGA
AGCGCACGCTCGTATCCATCAACTAGAGAAAGTATTTATTCTGGCGATGCTACTGGCTTCTGCTCTTGTCATTATTGCGT
CCCATATTTTTTCTAACTTCATTACTGCACCTTTACTGAGACTCACATGGGCAGCCGAGAAAGTCTCTGCCGGTGATTGG
GATGAGCCAGTAATCAACACCGACAGAAGTGATGAAATAGGAAGGCTGGCGGTAAGCTTCGAAAGGATGCAACGCTCTAT
CCGGGAAAAAATACTCACTATACGAAAACAAAATAAGGAGCTGGAAGAAAACCTCAAAGTCATTCAGCAGCAAAACAATG
AACTACAGCTCGCTGATAAATTAAAAGATGAATTTCTGGCCACAACCTCTCACGAACTCAGAACACCACTTCACGGTATG
ATAGGCATTGCTGAAGCTCTTAGCGCTGGTGCCAGTGGATCTGTTCCTGCAAACCAAAAATACCAACTCGACATCATAAT
AAACAGCGGTCAAAGACTGGCAAACCTTGTCGATGACCTTCTGGATTATCACAAAATGCGCTATGGCAGCCTAGAGATTA
GCCATAAAGCAACCGATCTGTTCCACGCTACCAGCATTGTGTTACAGCTTTCAACGCACCTGATAGGTAAGAAACGAATT
CGGATCATCAACCAACTCCCGATTGAATTACCACCGGTGGTTGCAGATCCGCAGCGTTTGGAACAGGTTCTATACAATTT
AGTCGGGAACGCTATTAAGTATACCGATGAAGGTAAAATCGTTATTTCCGCTGAAACACTAGAACATCAGATGCGTATCC
AGATAGTAGATACCGGCCAGGGAATCCCTGCTGAATATTTAGAACACATCTTCGAGCCACTAGTTCAAGCGGGAGGAAAG
AGTGCGAGCTATAAACAAGGCGCTGGTCTTGGTCTTTCTATCAGTCGCCAGTTAATCGAACTCATGGGTGGTTCACTTTA
TGTGAGCAGTCAGCCGGAAGTAGGTACAACGTTTAGCTTTACACTGCCGCTCGCCGGAGAAAACGTGATACCAAACGAGT
CAGAAGAGGCTCAGCTTCATTATCAACTTCCTTCTGTACAAGCATTACCAGATACACCTTCTGATATTGTTCAGGAAAAC
TTCGATGGTCCTTTGGTTATCGCTGCTGACGATGAGCCGGTAAACCTGAGTGTTTTAAAGAACTTCTTGGCATTAGAAGG
ATTTCGGGTAAAAACAGCAACCAAAGGGACTGAGGTGCTTCAGCTAGTCGATGAAGAAAAACCAGACATAGTATTACTGG
ATATTATGATGCCCGGCCTTAATGGATATGAAGTATGCCGTTCAATAAGAACTGAATACAGTCATACTGAACTGCCAATA
GTCATGTTAACGGCCCTCAATCAGGCAGAAGACCGAATTGAAGGGTTTAAGTCGGGAGCCAATGATTACCTTAGCAAGCC
ATTCAATCGTCTGGAACTCGCAGCGAGAATTCATGTTCATATTTCAGCGAGCCAAACAGAGCAAGAAAAACAGAGAAACC
ATCAGCTTAAACTAGAAATTGAGAAAAGAACGAAGGCAGAAAATGAGTTACTTGCAACGCAAAAGCGCCTGATAGAGCAA
CTCGATGGTGCTCCAGAAGCGATCCTTTGTCTTCAGGACGAGCAAGAAATCCGGTTTGCCAATGAAGCTGCGTCTGTCTT
ATTCCGCAGAACAGCAGAACAACTCAAGCGCTCAAATGCTGAAGAAGTTATCGCGACAAAGTATCTCAATTCGAGCCAGG
AGCACTACTGTGGTGATATTGAGATATTTTCAGGTACACAGCGTCTTCATGTTTCAGGAGATATAATCAGGCTTCCGAAA
AGTTCAGGCATCAGCACCATGTTTATTTTTGATATCGACGGAGAGGTGAATACGCATCGAGTACGCAAGCTCGAAACCGC
TGTAGAGGCACTATCCAGTTACGCCTTTGAAGGTGGTTCAGATAATCTGGATAAACTCAAACAACTCGGTGACGAGTTTA
AAGGCATTGCAGACAAAGCCACTGGTAACACGAAAGACAAACAGACTCTCATTAGAGAAACGCTCGTTGCTGCAATGACC
ACAGCTTTGTCGTACTGGGAACATACAACAGGAAAAACCAAGTTCAACTTTGCTGAAGAGAGTGGTTTATGGAAGGTTTA
CCTCGACCGCAGTACTCTTCAGACAAGAACACTGGATAAGTACCTAAGAGTGGAAACCGTACCTAAAACACCTCGATGGC
GAACTGTCCTTAGCTCTATCGATTTTATTCTGGAACATTGCCATGAAGAGAGCGGACAAAGGAAAGAGCTAGAGCAGATT
AAGCAGCGTTTAAATCGTTTGGTGACATCGTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (576-685)

• His Kinase A (phospho-acceptor) domain (HisKA) (462-527)

• HAMP domain (HAMP) (377-429)

• Response regulator receiver domain (Response_reg) (726-837)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	62.334	100	0.624