Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   SNR28_RS04090 Genome accession   NZ_CP145310
Coordinates   910048..911145 (+) Length   365 a.a.
NCBI ID   WP_375749749.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 905048..916145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS04060 (SNR28_04060) - 905612..905926 (-) 315 WP_375749744.1 DUF496 family protein -
  SNR28_RS04065 (SNR28_04065) - 906261..906911 (+) 651 WP_375749745.1 YceH family protein -
  SNR28_RS04070 (SNR28_04070) - 906936..907214 (+) 279 WP_375749746.1 GIY-YIG nuclease family protein -
  SNR28_RS04075 (SNR28_04075) - 907331..908035 (+) 705 WP_375749747.1 hypothetical protein -
  SNR28_RS04080 (SNR28_04080) - 908051..908446 (+) 396 Protein_815 GGDEF domain-containing protein -
  SNR28_RS04085 (SNR28_04085) - 908727..909902 (+) 1176 WP_375749748.1 conjugal transfer protein TraF -
  SNR28_RS04090 (SNR28_04090) luxP 910048..911145 (+) 1098 WP_375749749.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  SNR28_RS04095 (SNR28_04095) - 911145..913691 (+) 2547 WP_375749750.1 LuxQ periplasmic sensor domain-containing protein -
  SNR28_RS04100 (SNR28_04100) - 913751..914410 (-) 660 WP_375749751.1 PilZ domain-containing protein -
  SNR28_RS04105 (SNR28_04105) - 914512..914832 (-) 321 WP_375749752.1 hypothetical protein -
  SNR28_RS04110 (SNR28_04110) - 914892..915059 (-) 168 WP_375749753.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41457.17 Da        Isoelectric Point: 7.4616

>NTDB_id=938395 SNR28_RS04090 WP_375749749.1 910048..911145(+) (luxP) [Vibrio sp. HN007]
MKRKTKLCAALSLLYSSFLFSAEHISSYWGYQSYLEAFPHQELLTKAFDEVVRETPVPIAMSNKNPITISVVYPGEQVSD
YWRRNIKAFELRLNELNINYELVQVFTKPNADTRQQSISLNNALKSNTDYLIFTLDTSRHKKFIEHVLHTSKTKLILQNI
TTPVKGWEKKQPFFYVGFDHETGTLALADYFKAVLPEKSEYSVLYFSQGYISDVRGDTFIKSMNSSGEYILSSSFYTKAN
KLSGYRTTKLMLEKNPNIKLIYACSTDIALGAVDALKELGRTDIKINGWGGGSAELNALKLGDLDVTVMRMNDDTGVAMA
EAIKWDMEGKATPTVYSGSFELVTNDDSPERVEHLKQYAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=938395 SNR28_RS04090 WP_375749749.1 910048..911145(+) (luxP) [Vibrio sp. HN007]
GTGAAGAGAAAAACCAAGCTTTGTGCGGCGCTCAGTCTCCTGTATTCTTCATTCCTTTTTAGTGCAGAGCACATAAGCAG
CTATTGGGGATACCAATCCTATTTGGAAGCGTTCCCTCATCAAGAGTTACTTACCAAGGCATTCGATGAAGTTGTCCGGG
AAACGCCTGTTCCAATTGCTATGTCGAATAAAAATCCGATAACCATTTCGGTGGTTTATCCTGGTGAGCAGGTCTCGGAT
TATTGGCGAAGAAACATCAAAGCCTTTGAGCTGAGATTAAATGAGCTCAACATCAACTACGAGCTTGTACAGGTGTTCAC
AAAACCCAATGCGGATACCAGACAGCAAAGTATCTCTCTGAATAACGCATTAAAAAGTAATACTGACTATCTTATATTTA
CGTTGGATACGAGCAGACACAAAAAGTTTATTGAACATGTGTTACATACGTCTAAAACCAAGTTAATCCTGCAAAACATT
ACCACTCCAGTTAAAGGGTGGGAGAAGAAGCAGCCGTTTTTCTATGTGGGGTTCGACCACGAAACAGGCACACTCGCGCT
GGCCGACTACTTTAAAGCAGTCCTTCCTGAGAAGTCTGAGTATTCCGTACTTTATTTTTCTCAGGGTTACATCAGTGACG
TTAGGGGGGATACCTTTATTAAGTCGATGAATAGCAGCGGTGAGTATATTCTAAGCTCTTCATTCTATACCAAAGCCAAC
AAACTGAGTGGGTATAGAACGACTAAGTTAATGTTAGAAAAAAATCCAAATATCAAACTGATTTACGCTTGCTCTACCGA
TATTGCACTAGGAGCGGTAGATGCACTCAAAGAACTCGGTAGAACGGACATCAAAATTAATGGCTGGGGTGGTGGTTCTG
CAGAACTTAACGCATTAAAATTAGGCGATCTTGATGTCACTGTGATGCGTATGAATGATGATACTGGAGTAGCGATGGCC
GAAGCGATAAAGTGGGATATGGAAGGTAAAGCCACACCTACAGTCTATTCCGGTAGTTTTGAATTAGTGACTAACGATGA
CAGTCCAGAGAGAGTGGAGCACTTGAAACAGTACGCATTCAGGTATTCAGACAGATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

60.705

100

0.614