Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C80_RS06000 | Genome accession | NZ_CP145258 |
| Coordinates | 1240744..1241718 (+) | Length | 324 a.a. |
| NCBI ID | WP_047796322.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain DSM 6717 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1235744..1246718
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C80_RS05965 (V6C80_05960) | rpmG | 1236255..1236404 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C80_RS05970 (V6C80_05965) | - | 1236555..1237106 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C80_RS05975 (V6C80_05970) | - | 1237107..1238570 (+) | 1464 | WP_047796324.1 | rhomboid family intramembrane serine protease | - |
| V6C80_RS05980 (V6C80_05975) | - | 1238551..1238754 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C80_RS05985 (V6C80_05980) | - | 1238751..1239737 (+) | 987 | WP_002433633.1 | ROK family glucokinase | - |
| V6C80_RS05990 (V6C80_05985) | - | 1239737..1240063 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C80_RS05995 (V6C80_05990) | - | 1240063..1240686 (+) | 624 | WP_047796323.1 | MBL fold metallo-hydrolase | - |
| V6C80_RS06000 (V6C80_05995) | comGA | 1240744..1241718 (+) | 975 | WP_047796322.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C80_RS06005 (V6C80_06000) | comGB | 1241690..1242757 (+) | 1068 | WP_047796321.1 | competence type IV pilus assembly protein ComGB | - |
| V6C80_RS06010 (V6C80_06005) | comGC | 1242776..1243087 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C80_RS06015 (V6C80_06010) | comGD | 1243065..1243514 (+) | 450 | WP_162488576.1 | competence type IV pilus minor pilin ComGD | - |
| V6C80_RS06020 (V6C80_06015) | - | 1243501..1243800 (+) | 300 | WP_002433765.1 | hypothetical protein | - |
| V6C80_RS06025 (V6C80_06020) | comGF | 1243718..1244209 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C80_RS06030 (V6C80_06025) | - | 1244379..1244888 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C80_RS06035 (V6C80_06030) | gcvT | 1245097..1246188 (+) | 1092 | WP_047796320.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37052.85 Da Isoelectric Point: 7.6989
>NTDB_id=938347 V6C80_RS06000 WP_047796322.1 1240744..1241718(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=938347 V6C80_RS06000 WP_047796322.1 1240744..1241718(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |