Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACET1A_RS00370 Genome accession   NZ_CP169029
Coordinates   73492..74160 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain UTME-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68492..79160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1A_RS00340 (ACET1A_00340) yicC 68511..69374 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  ACET1A_RS00345 (ACET1A_00345) rph 69501..70217 (+) 717 WP_001247093.1 ribonuclease PH -
  ACET1A_RS00350 (ACET1A_00350) pyrE 70283..70924 (+) 642 WP_000806154.1 orotate phosphoribosyltransferase -
  ACET1A_RS00355 (ACET1A_00355) slmA 70961..71557 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ACET1A_RS00360 (ACET1A_00360) dut 71664..72122 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ACET1A_RS00365 (ACET1A_00365) coaBC 72100..73320 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ACET1A_RS00370 (ACET1A_00370) radC 73492..74160 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  ACET1A_RS00375 (ACET1A_00375) rpmB 74377..74613 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ACET1A_RS00380 (ACET1A_00380) rpmG 74634..74801 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ACET1A_RS00385 (ACET1A_00385) mutM 74899..75708 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ACET1A_RS00390 (ACET1A_00390) coaD 75747..76226 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ACET1A_RS00395 (ACET1A_00395) waaA 76234..77511 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ACET1A_RS00400 (ACET1A_00400) rfaQ 77924..78982 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=938290 ACET1A_RS00370 WP_001297375.1 73492..74160(+) (radC) [Escherichia coli strain UTME-7]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=938290 ACET1A_RS00370 WP_001297375.1 73492..74160(+) (radC) [Escherichia coli strain UTME-7]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496