Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8946_RS05855 Genome accession   NZ_AP028374
Coordinates   1134396..1134890 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10881     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129396..1139890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8946_RS05840 (B10881_11480) - 1130782..1131960 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  R8946_RS05845 (B10881_11490) gpsA 1131970..1132866 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8946_RS05850 (B10881_11500) gatB 1132863..1134281 (-) 1419 WP_002868575.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8946_RS05855 (B10881_11510) luxS 1134396..1134890 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  R8946_RS05860 (B10881_11520) - 1135202..1136194 (+) 993 WP_002868574.1 isopenicillin N synthase family dioxygenase -
  R8946_RS05865 (B10881_11530) - 1136205..1136975 (+) 771 WP_002868573.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8946_RS05870 (B10881_11540) metE 1136987..1139251 (+) 2265 WP_002868572.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=93824 R8946_RS05855 WP_002859279.1 1134396..1134890(+) (luxS) [Campylobacter jejuni strain BCH-10881]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93824 R8946_RS05855 WP_002859279.1 1134396..1134890(+) (luxS) [Campylobacter jejuni strain BCH-10881]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGTATACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment