Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   V6C62_RS04400 Genome accession   NZ_CP145249
Coordinates   907721..908437 (-) Length   238 a.a.
NCBI ID   WP_002436958.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365666     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 902721..913437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C62_RS04385 (V6C62_04390) - 904030..904980 (+) 951 WP_023350002.1 LacI family DNA-binding transcriptional regulator -
  V6C62_RS04390 (V6C62_04395) - 905215..906690 (+) 1476 WP_213667970.1 sucrose-6-phosphate hydrolase -
  V6C62_RS04395 (V6C62_04400) - 906697..907656 (+) 960 WP_023350003.1 carbohydrate kinase -
  V6C62_RS04400 (V6C62_04405) agrA 907721..908437 (-) 717 WP_002436958.1 quorum-sensing response regulator AgrA Regulator
  V6C62_RS04405 (V6C62_04410) agrC 908453..909742 (-) 1290 WP_002436956.1 quorum-sensing sensor histidine kinase AgrC -
  V6C62_RS04410 (V6C62_04415) agrD 909766..909906 (-) 141 WP_030063609.1 cyclic lactone autoinducer peptide AgrD -
  V6C62_RS04415 (V6C62_04420) - 909909..910475 (-) 567 WP_002436953.1 accessory gene regulator AgrB -
  V6C62_RS04420 - 910792..910869 (+) 78 WP_049307263.1 delta-lysin family phenol-soluble modulin -
  V6C62_RS04425 (V6C62_04425) - 911237..912022 (-) 786 WP_002436943.1 carbon-nitrogen family hydrolase -
  V6C62_RS04430 (V6C62_04430) - 912124..912750 (-) 627 WP_002436950.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27857.83 Da        Isoelectric Point: 5.2308

>NTDB_id=938197 V6C62_RS04400 WP_002436958.1 907721..908437(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1365666]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=938197 V6C62_RS04400 WP_002436958.1 907721..908437(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1365666]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGACATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGACCCT
GTGGGTAACATTATTTTTGTAACAAGTCACAGCGAACTTACTTATCTCACTTTTGTTTATAAAGTGGCTGCTATGGATTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGATATTATG
TTCTTTGAATCATCAACTAAGTCACACAGATTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTAGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGTTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

91.176

100

0.912