Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V6C47_RS10485 Genome accession   NZ_CP145248
Coordinates   2169605..2170972 (-) Length   455 a.a.
NCBI ID   WP_367121088.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2164605..2175972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C47_RS10470 (V6C47_10470) cysE 2165467..2166096 (-) 630 WP_171002259.1 serine O-acetyltransferase -
  V6C47_RS10475 (V6C47_10475) gltX 2166519..2167973 (-) 1455 WP_367121087.1 glutamate--tRNA ligase -
  V6C47_RS10480 (V6C47_10480) - 2168383..2169447 (-) 1065 WP_161799216.1 PIN/TRAM domain-containing protein -
  V6C47_RS10485 (V6C47_10485) radA 2169605..2170972 (-) 1368 WP_367121088.1 DNA repair protein RadA Machinery gene
  V6C47_RS10490 (V6C47_10490) - 2171315..2173768 (-) 2454 WP_002433302.1 ATP-dependent Clp protease ATP-binding subunit -
  V6C47_RS10495 (V6C47_10495) - 2173783..2174787 (-) 1005 WP_367121089.1 protein arginine kinase -
  V6C47_RS10500 (V6C47_10500) - 2174780..2175343 (-) 564 WP_367121090.1 UvrB/UvrC motif-containing protein -
  V6C47_RS10505 (V6C47_10505) - 2175363..2175824 (-) 462 WP_002433457.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49887.31 Da        Isoelectric Point: 6.7205

>NTDB_id=938185 V6C47_RS10485 WP_367121088.1 2169605..2170972(-) (radA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKEAAGKVQKLDNVKHESTPRILTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNNNVLYITGEESINQTKLRADRLEEDSSQLNVLAETDLEVIHQTVK
DERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMDIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQIGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVIGVSSVHEALKYALHSS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=938185 V6C47_RS10485 WP_367121088.1 2169605..2170972(-) (radA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
GTGGCCAAGAAAAAAGTAATATTTGAGTGTATGGCATGTGGCTATCAATCTCCTAAATGGATGGGGAAATGTCCAAACTG
TGGTGCATGGAACCAGATGGAAGAAATTGTAGAGAAAGCTGCAAACCCTAAACATGGAGTGAAATCTAAAGAAGCGGCAG
GAAAAGTTCAAAAATTGGATAATGTTAAACATGAATCTACCCCTAGAATTCTAACGGATTCTAAAGAATTTAACAGAGTC
CTTGGTGGAGGGATTGTCAGTGGATCACTCGTACTTATAGGTGGCGATCCTGGTATAGGGAAGTCTACGTTGCTTCTTCA
AATATGTGCGGCATTATCTCAAAATAATAATGTCTTATATATTACAGGTGAGGAATCTATCAATCAGACTAAACTACGTG
CCGACCGCTTAGAAGAAGATTCTAGTCAACTCAATGTATTAGCAGAGACTGATTTAGAAGTCATTCATCAAACAGTTAAG
GATGAACGACCAGATTTACTTGTAGTAGATTCAATACAAACTATTTATCATCCTGAAATCAGTTCTGCACCGGGTTCTGT
ATCTCAAGTAAGAGAAAGTACTCAAAGTCTAATGAATATCGCAAAGCAAATGGATATCGCAACGTTCATCGTCGGTCATG
TTACGAAAGAAGGACAAATTGCCGGTCCAAGATTACTTGAACATATGGTGGATACCGTGCTTTACTTTGAAGGTGATGAA
CATCATGCTTATCGAATTTTACGTGCGGTTAAAAACCGTTTTGGCTCCACGAATGAGATGGGTATTTTCGAAATGAAGCA
AATTGGTTTGAAAGGTGTCTTAAATCCGTCTGAAATGTTCTTAGAAGAACGTTCTACAAACGTGCCAGGTTCAACAATTG
TACCGACTATGGAAGGTACAAGACCATTATTAATAGAGGTCCAAGCGTTAGTCACACCGACCACTTTCAACAATCCAAGA
CGTATGGCTACGGGCATAGATCATAATCGATTAAGTTTGCTTATGGCAGTTTTAGAGAAGAAGGAGAATTATTTACTTCA
ACAACAAGATGCTTATATCAAAGTTGCTGGTGGTGTGAAATTAACAGAACCAGCCGTTGACTTAAGTATTATTGTTGCGA
CAGCTTCAAGCTTTAAGGATAAAGCGGTAGACGGTTTAGATTGCTTTGTTGGAGAGGTTGGCCTAACAGGTGAAGTTCGA
CGTGTGTCACGCATTGAACAACGCGTGCAAGAGGCGGCTAAACTTGGATTCAAACGAGCGATTATACCTCAAACTAATAT
TGGTGGGTGGACTTTCCCGGAAGGTATTCAAGTCATAGGAGTGTCTTCTGTGCATGAGGCTTTAAAATATGCGCTTCATT
CTTCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.447

100

0.666
  radA Streptococcus pneumoniae Rx1

61.024

98.681

0.602
  radA Streptococcus pneumoniae D39

61.024

98.681

0.602
  radA Streptococcus pneumoniae R6

61.024

98.681

0.602
  radA Streptococcus pneumoniae TIGR4

61.024

98.681

0.602
  radA Streptococcus mitis NCTC 12261

61.024

98.681

0.602
  radA Streptococcus mitis SK321

61.024

98.681

0.602