Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   V6C47_RS04065 Genome accession   NZ_CP145248
Coordinates   850909..851625 (-) Length   238 a.a.
NCBI ID   WP_002436958.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365669     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 845909..856625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C47_RS04050 (V6C47_04065) - 847220..848170 (+) 951 WP_367121673.1 LacI family DNA-binding transcriptional regulator -
  V6C47_RS04055 (V6C47_04070) - 848403..849878 (+) 1476 WP_367121674.1 sucrose-6-phosphate hydrolase -
  V6C47_RS04060 (V6C47_04075) - 849885..850844 (+) 960 WP_367121675.1 carbohydrate kinase family protein -
  V6C47_RS04065 (V6C47_04080) agrA 850909..851625 (-) 717 WP_002436958.1 quorum-sensing response regulator AgrA Regulator
  V6C47_RS04070 (V6C47_04085) agrC 851641..852930 (-) 1290 WP_367121676.1 quorum-sensing sensor histidine kinase AgrC -
  V6C47_RS04075 (V6C47_04090) agrD 852953..853093 (-) 141 WP_049428106.1 cyclic lactone autoinducer peptide AgrD -
  V6C47_RS04080 (V6C47_04095) - 853096..853662 (-) 567 WP_367121677.1 accessory gene regulator AgrB -
  V6C47_RS04085 (V6C47_11525) - 853979..854056 (+) 78 WP_367121872.1 delta-lysin family phenol-soluble modulin -
  V6C47_RS04090 (V6C47_04100) - 854423..855208 (-) 786 WP_367121678.1 carbon-nitrogen family hydrolase -
  V6C47_RS04095 (V6C47_04105) - 855310..855936 (-) 627 WP_064210782.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27857.83 Da        Isoelectric Point: 5.2308

>NTDB_id=938163 V6C47_RS04065 WP_002436958.1 850909..851625(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=938163 V6C47_RS04065 WP_002436958.1 850909..851625(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGATATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGACCCT
GTGGGTAACATTATTTTTGTAACAAGTCACAGCGAACTTACTTATCTCACATTTGTTTATAAAGTGGCTGCTATGGACTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGATATTATG
TTCTTTGAATCTTCAACTAAGTCACACAGACTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTAGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGTTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

91.176

100

0.912