Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACET1L_RS13545 Genome accession   NZ_CP169023
Coordinates   2551899..2552483 (-) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli strain UTME-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2546899..2557483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1L_RS13530 (ACET1L_13530) helD 2547141..2549195 (-) 2055 WP_001297106.1 DNA helicase IV -
  ACET1L_RS13535 (ACET1L_13535) yccF 2549318..2549764 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACET1L_RS13540 (ACET1L_13540) yccS 2549774..2551936 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ACET1L_RS13545 (ACET1L_13545) sxy/tfoX 2551899..2552483 (-) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACET1L_RS13550 (ACET1L_13550) sulA 2552747..2553256 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACET1L_RS13555 (ACET1L_13555) ompA 2553613..2554653 (+) 1041 WP_000750416.1 porin OmpA -
  ACET1L_RS13560 (ACET1L_13560) matP 2554729..2555181 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACET1L_RS13565 (ACET1L_13565) ycbZ 2555367..2557127 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=938159 ACET1L_RS13545 WP_077825616.1 2551899..2552483(-) (sxy/tfoX) [Escherichia coli strain UTME-6]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=938159 ACET1L_RS13545 WP_077825616.1 2551899..2552483(-) (sxy/tfoX) [Escherichia coli strain UTME-6]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995