Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   V6D01_RS04285 Genome accession   NZ_CP145244
Coordinates   882761..883477 (-) Length   238 a.a.
NCBI ID   WP_367122952.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365670     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 877761..888477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D01_RS04270 (V6D01_04260) - 879070..880020 (+) 951 WP_023350002.1 LacI family DNA-binding transcriptional regulator -
  V6D01_RS04275 (V6D01_04265) - 880255..881730 (+) 1476 WP_002469613.1 sucrose-6-phosphate hydrolase -
  V6D01_RS04280 (V6D01_04270) - 881737..882696 (+) 960 WP_023350003.1 carbohydrate kinase -
  V6D01_RS04285 (V6D01_04275) agrA 882761..883477 (-) 717 WP_367122952.1 quorum-sensing response regulator AgrA Regulator
  V6D01_RS04290 (V6D01_04280) agrC 883493..884782 (-) 1290 WP_367122953.1 quorum-sensing sensor histidine kinase AgrC -
  V6D01_RS04295 (V6D01_04285) agrD 884806..884946 (-) 141 WP_030063609.1 cyclic lactone autoinducer peptide AgrD -
  V6D01_RS04300 (V6D01_04290) - 884949..885515 (-) 567 WP_002436953.1 accessory gene regulator AgrB -
  V6D01_RS04305 - 885832..885909 (+) 78 WP_049307263.1 delta-lysin family phenol-soluble modulin -
  V6D01_RS04310 (V6D01_04295) - 886277..887062 (-) 786 WP_002436943.1 carbon-nitrogen family hydrolase -
  V6D01_RS04315 (V6D01_04300) - 887164..887790 (-) 627 WP_002436950.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27799.79 Da        Isoelectric Point: 5.4165

>NTDB_id=938130 V6D01_RS04285 WP_367122952.1 882761..883477(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDGIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=938130 V6D01_RS04285 WP_367122952.1 882761..883477(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGACATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGACCCT
GTGGGTAACATTATATTTGTAACAAGTCACAGCGAACTTACTTATCTCACTTTTGTTTATAAAGTGGCTGCTATGGATTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGGTATTATG
TTCTTTGAATCATCAACTAAGTCACACAGATTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTAGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGTTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

90.756

100

0.908