Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C49_RS06080 | Genome accession | NZ_CP145241 |
| Coordinates | 1223444..1224418 (+) | Length | 324 a.a. |
| NCBI ID | WP_367141567.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. capitis strain Sc1365673 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1218444..1229418
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C49_RS06045 (V6C49_06035) | rpmG | 1218957..1219106 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C49_RS06050 (V6C49_06040) | - | 1219255..1219806 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C49_RS06055 (V6C49_06045) | - | 1219807..1221270 (+) | 1464 | WP_002453338.1 | rhomboid family intramembrane serine protease | - |
| V6C49_RS06060 (V6C49_06050) | - | 1221251..1221454 (+) | 204 | WP_002453337.1 | YqgQ family protein | - |
| V6C49_RS06065 (V6C49_06055) | - | 1221451..1222437 (+) | 987 | WP_002453336.1 | ROK family glucokinase | - |
| V6C49_RS06070 (V6C49_06060) | - | 1222437..1222763 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C49_RS06075 (V6C49_06065) | - | 1222763..1223386 (+) | 624 | WP_002453335.1 | MBL fold metallo-hydrolase | - |
| V6C49_RS06080 (V6C49_06070) | comGA | 1223444..1224418 (+) | 975 | WP_367141567.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C49_RS06085 (V6C49_06075) | comGB | 1224390..1225461 (+) | 1072 | Protein_1158 | competence type IV pilus assembly protein ComGB | - |
| V6C49_RS06090 (V6C49_06080) | comGC | 1225480..1225791 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C49_RS06095 (V6C49_06085) | comGD | 1225769..1226218 (+) | 450 | WP_367141568.1 | competence type IV pilus minor pilin ComGD | - |
| V6C49_RS06100 (V6C49_06090) | - | 1226205..1226504 (+) | 300 | WP_002453332.1 | hypothetical protein | - |
| V6C49_RS06105 (V6C49_06095) | comGF | 1226485..1226913 (+) | 429 | WP_331245879.1 | competence type IV pilus minor pilin ComGF | - |
| V6C49_RS06110 (V6C49_06100) | - | 1227083..1227592 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C49_RS06115 (V6C49_06105) | gcvT | 1227801..1228892 (+) | 1092 | WP_367141569.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37070.89 Da Isoelectric Point: 7.7163
>NTDB_id=938107 V6C49_RS06080 WP_367141567.1 1223444..1224418(+) (comGA) [Staphylococcus capitis subsp. capitis strain Sc1365673]
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLVSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLVSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=938107 V6C49_RS06080 WP_367141567.1 1223444..1224418(+) (comGA) [Staphylococcus capitis subsp. capitis strain Sc1365673]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTG
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTG
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.279 |
99.691 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.279 |
99.691 |
0.701 |