Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACET1F_RS18860 Genome accession   NZ_CP169018
Coordinates   3607872..3608501 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain UTAK-15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3602872..3613501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1F_RS18845 (ACET1F_18845) helD 3603114..3605168 (-) 2055 WP_001297106.1 DNA helicase IV -
  ACET1F_RS18850 (ACET1F_18850) yccF 3605291..3605737 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACET1F_RS18855 (ACET1F_18855) yccS 3605747..3607909 (+) 2163 WP_374041033.1 YccS family putative transporter -
  ACET1F_RS18860 (ACET1F_18860) sxy/tfoX 3607872..3608501 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACET1F_RS18865 (ACET1F_18865) sulA 3608720..3609229 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACET1F_RS18870 (ACET1F_18870) ompA 3609586..3610626 (+) 1041 WP_000750416.1 porin OmpA -
  ACET1F_RS18875 (ACET1F_18875) matP 3610701..3611153 (-) 453 WP_000877167.1 macrodomain Ter protein MatP -
  ACET1F_RS18880 (ACET1F_18880) ycbZ 3611339..3613099 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=938093 ACET1F_RS18860 WP_000839153.1 3607872..3608501(-) (sxy/tfoX) [Escherichia coli strain UTAK-15]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=938093 ACET1F_RS18860 WP_000839153.1 3607872..3608501(-) (sxy/tfoX) [Escherichia coli strain UTAK-15]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1