Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V6C67_RS11325 Genome accession   NZ_CP145238
Coordinates   2267614..2268981 (-) Length   455 a.a.
NCBI ID   WP_002433170.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365674     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2262614..2273981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C67_RS11310 (V6C67_11290) cysE 2263477..2264106 (-) 630 WP_171002259.1 serine O-acetyltransferase -
  V6C67_RS11315 (V6C67_11295) gltX 2264528..2265982 (-) 1455 WP_002433261.1 glutamate--tRNA ligase -
  V6C67_RS11320 (V6C67_11300) - 2266392..2267474 (-) 1083 WP_002433077.1 PIN/TRAM domain-containing protein -
  V6C67_RS11325 (V6C67_11305) radA 2267614..2268981 (-) 1368 WP_002433170.1 DNA repair protein RadA Machinery gene
  V6C67_RS11330 (V6C67_11310) - 2269324..2271777 (-) 2454 WP_002433302.1 ATP-dependent Clp protease ATP-binding subunit -
  V6C67_RS11335 (V6C67_11315) - 2271792..2272796 (-) 1005 WP_002433454.1 protein arginine kinase -
  V6C67_RS11340 (V6C67_11320) - 2272789..2273352 (-) 564 WP_002433344.1 UvrB/UvrC motif-containing protein -
  V6C67_RS11345 (V6C67_11325) - 2273372..2273833 (-) 462 WP_002433457.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49875.30 Da        Isoelectric Point: 6.8755

>NTDB_id=938086 V6C67_RS11325 WP_002433170.1 2267614..2268981(-) (radA) [Staphylococcus capitis subsp. urealyticus strain Sc1365674]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKEAAGKVQKLDNVKHESTPRILTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSQLNVLAETDLEVIHQTVK
DERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMDIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVIGVSSVHEALKYALHSS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=938086 V6C67_RS11325 WP_002433170.1 2267614..2268981(-) (radA) [Staphylococcus capitis subsp. urealyticus strain Sc1365674]
GTGGCCAAGAAAAAAGTAATATTTGAGTGTATGGCATGTGGCTATCAATCTCCTAAATGGATGGGGAAATGTCCAAACTG
TGGTGCATGGAACCAGATGGAAGAAATTGTAGAGAAAGCTGCAAACCCTAAACATGGAGTGAAATCTAAAGAAGCGGCAG
GAAAAGTTCAAAAATTGGATAATGTTAAACATGAATCTACCCCTAGAATTCTAACGGATTCTAAAGAATTTAACAGAGTC
CTTGGTGGAGGGATTGTCAGTGGATCACTCGTACTTATAGGTGGCGATCCTGGTATAGGGAAGTCTACGTTGCTTCTTCA
AATATGTGCGGCATTATCTCAAAATAAGAATGTCTTATATATTACAGGTGAGGAATCTATCAATCAGACTAAACTACGTG
CCGACCGCTTAGAAGAAGATTCTAGTCAACTCAATGTATTAGCAGAGACTGATTTAGAAGTCATTCATCAAACAGTTAAG
GATGAACGCCCAGATTTACTTGTAGTAGATTCAATTCAAACTATTTATCATCCTGAAATCAGTTCTGCACCGGGTTCTGT
ATCTCAAGTAAGAGAAAGTACTCAAAGTCTAATGAATATCGCAAAGCAAATGGATATCGCAACGTTCATCGTCGGTCATG
TTACGAAAGAAGGACAAATTGCCGGTCCAAGATTACTTGAACATATGGTGGATACCGTGCTTTACTTTGAAGGTGATGAA
CATCATGCTTATCGAATTTTACGTGCGGTTAAAAACCGTTTTGGCTCCACGAATGAGATGGGTATTTTCGAAATGAAGCA
AAGTGGTTTGAAAGGTGTCTTAAATCCGTCTGAAATGTTCTTAGAAGAACGTTCTACAAACGTGCCAGGTTCAACAATTG
TACCGACTATGGAAGGTACAAGACCACTATTAATAGAGGTCCAAGCGTTAGTCACACCGACCACTTTCAACAATCCAAGA
CGTATGGCTACGGGCATAGATCATAATCGATTAAGTTTGCTTATGGCAGTTTTAGAGAAGAAGGAGAATTATTTACTTCA
ACAACAAGATGCTTATATCAAAGTTGCTGGTGGTGTGAAATTAACAGAACCAGCCGTTGACTTAAGTATTATTGTTGCGA
CAGCTTCAAGCTTTAAGGATAAAGCGGTAGACGGTTTAGATTGCTTTGTTGGAGAGGTTGGTCTAACAGGTGAAGTTCGA
CGTGTGTCACGCATTGAACAACGCGTGCAAGAGGCGGCTAAACTTGGATTCAAACGAGCGATTATACCTCAAACTAATAT
TGGTGGGTGGACTTTCCCGGAAGGTATTCAAGTCATAGGAGTGTCTTCTGTGCATGAGGCTTTAAAATATGCGCTTCATT
CTTCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.447

100

0.666
  radA Streptococcus pneumoniae Rx1

61.024

98.681

0.602
  radA Streptococcus pneumoniae D39

61.024

98.681

0.602
  radA Streptococcus pneumoniae R6

61.024

98.681

0.602
  radA Streptococcus pneumoniae TIGR4

61.024

98.681

0.602
  radA Streptococcus mitis NCTC 12261

61.024

98.681

0.602
  radA Streptococcus mitis SK321

61.024

98.681

0.602