Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraS   Type   Regulator
Locus tag   V6C48_RS04765 Genome accession   NZ_CP145236
Coordinates   1000734..1001780 (+) Length   348 a.a.
NCBI ID   WP_072098647.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365682     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 995734..1006780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C48_RS04735 (V6C48_04725) - 995998..996723 (+) 726 WP_002469718.1 type 1 glutamine amidotransferase -
  V6C48_RS04740 (V6C48_04730) - 996952..997494 (+) 543 WP_023350030.1 hypothetical protein -
  V6C48_RS04745 (V6C48_04735) - 997572..998561 (-) 990 WP_002435886.1 aromatic acid exporter family protein -
  V6C48_RS04750 (V6C48_04740) map 998735..999490 (+) 756 WP_002435911.1 type I methionyl aminopeptidase -
  V6C48_RS04755 (V6C48_04745) - 999635..1000021 (+) 387 WP_002453601.1 hypothetical protein -
  V6C48_RS04760 (V6C48_04750) liaF 1000036..1000737 (+) 702 WP_002435891.1 cell wall-active antibiotics response protein LiaF -
  V6C48_RS04765 (V6C48_04755) vraS 1000734..1001780 (+) 1047 WP_072098647.1 sensor histidine kinase Regulator
  V6C48_RS04770 (V6C48_04760) vraR 1001770..1002399 (+) 630 WP_002469716.1 two-component system response regulator VraR Regulator
  V6C48_RS04775 (V6C48_04765) - 1002464..1003717 (-) 1254 WP_002435884.1 YihY/virulence factor BrkB family protein -
  V6C48_RS04780 (V6C48_04770) - 1004054..1004338 (-) 285 WP_002435890.1 hypothetical protein -
  V6C48_RS04785 (V6C48_04775) - 1004345..1004809 (-) 465 WP_002435947.1 low molecular weight protein-tyrosine-phosphatase -
  V6C48_RS04790 (V6C48_04780) - 1004950..1005156 (+) 207 WP_002435959.1 DUF1128 domain-containing protein -
  V6C48_RS04795 (V6C48_04785) - 1005170..1006411 (+) 1242 WP_023350031.1 aminopeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 40133.55 Da        Isoelectric Point: 6.2469

>NTDB_id=938032 V6C48_RS04765 WP_072098647.1 1000734..1001780(+) (vraS) [Staphylococcus capitis subsp. urealyticus strain Sc1365682]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNILIILLCIIVGSVLAYKINQQNDWLKS
QIERSIEGETVGINDQNLELYSETLEIYHTLVPLNQELHRLRMKTQNMTNENYNMNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLDQQIPVLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPKKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGSKVTVELFNKEDYLLLRIQDNGKGFNVDEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDESNGD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=938032 V6C48_RS04765 WP_072098647.1 1000734..1001780(+) (vraS) [Staphylococcus capitis subsp. urealyticus strain Sc1365682]
ATGAATCACTACTTGAGAGCAATTGGTTCAATGCTAATACTTGTATATAGCATGCTAACTGCTTTTTTATTCATTGATAA
GGTGTTCGTCAATATTATTTATTTTCAAGGGATGTTTTACACCCAAATTTTTGGAATACCAGTATTTTTATTCCTAAATA
TATTAATCATCTTACTATGTATTATCGTTGGCTCTGTGTTAGCGTATAAAATCAATCAACAAAATGATTGGCTTAAGTCA
CAAATTGAAAGGTCTATTGAAGGTGAAACAGTAGGCATAAATGATCAAAACCTAGAGTTATACAGTGAAACGTTAGAAAT
TTACCATACTTTAGTTCCTTTAAATCAAGAATTACACCGATTGAGAATGAAAACGCAGAATATGACCAATGAAAATTATA
ATATGAATGATGTAAAAGTGAAGAAAATTATTGAAGACGAACGTCAACGTTTAGCAAGAGAACTACATGACTCAGTTAGT
CAGCAACTATTTGCAGCAAGTATGATGTTGTCAGCGATTAAAGAGTCAAAATTAGAACCACCTTTAGACCAACAAATACC
TGTACTAGAGAAGATGGTTCAAGACTCTCAGCTCGAAATGAGAGCATTATTATTACATCTAAGACCTATTGGTTTGAAAG
ACAAATCATTAGGAGAGGGTATTAAAGATTTAGTCATTGATCTTCAAAAGAAAGTCCCTAAGAAAGTTGTTCATGAAATT
CAAGATTTCAAAGTACCAAAAGGGATAGAAGATCATTTGTTTAGAATCACCCAAGAGGCTATTTCTAATACATTACGACA
CTCTAATGGTTCTAAGGTAACAGTTGAATTATTTAATAAAGAAGATTATTTACTACTTAGAATTCAAGATAATGGTAAAG
GTTTTAATGTAGATGAAAAATTTGAACAGAGTTATGGATTAAAAAATATGAGAGAACGTGCTTTAGAGATTGGTGCCACA
TTCCATATCGTATCGTTACCGGATTCAGGTACGAGAATAGAAGTTAAAGCACCATTGAATAAGGAGGATGAATCAAATGG
CGATTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(147-210)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(249-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

93.294

98.563

0.92