Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C68_RS06795 | Genome accession | NZ_CP145228 |
| Coordinates | 1379880..1380854 (+) | Length | 324 a.a. |
| NCBI ID | WP_023350200.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365695 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1374880..1385854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C68_RS06760 (V6C68_06750) | rpmG | 1375393..1375542 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C68_RS06765 (V6C68_06755) | - | 1375691..1376242 (+) | 552 | WP_030063896.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C68_RS06770 (V6C68_06760) | - | 1376243..1377706 (+) | 1464 | WP_023350197.1 | rhomboid family intramembrane serine protease | - |
| V6C68_RS06775 (V6C68_06765) | - | 1377687..1377890 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C68_RS06780 (V6C68_06770) | - | 1377887..1378873 (+) | 987 | WP_023350198.1 | ROK family glucokinase | - |
| V6C68_RS06785 (V6C68_06775) | - | 1378873..1379199 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C68_RS06790 (V6C68_06780) | - | 1379199..1379822 (+) | 624 | WP_023350199.1 | MBL fold metallo-hydrolase | - |
| V6C68_RS06795 (V6C68_06785) | comGA | 1379880..1380854 (+) | 975 | WP_023350200.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C68_RS06800 (V6C68_06790) | comGB | 1380826..1381893 (+) | 1068 | WP_023350201.1 | competence type IV pilus assembly protein ComGB | - |
| V6C68_RS06805 (V6C68_06795) | comGC | 1381912..1382223 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C68_RS06810 (V6C68_06800) | comGD | 1382201..1382650 (+) | 450 | WP_023350202.1 | competence type IV pilus minor pilin ComGD | - |
| V6C68_RS06815 (V6C68_06805) | - | 1382637..1382936 (+) | 300 | WP_023350203.1 | hypothetical protein | - |
| V6C68_RS06820 (V6C68_06810) | comGF | 1382854..1383345 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C68_RS06825 (V6C68_06815) | - | 1383515..1384024 (+) | 510 | WP_323686856.1 | shikimate kinase | - |
| V6C68_RS06830 (V6C68_06820) | gcvT | 1384233..1385324 (+) | 1092 | WP_023350205.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37044.84 Da Isoelectric Point: 7.7305
>NTDB_id=937970 V6C68_RS06795 WP_023350200.1 1379880..1380854(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365695]
MKILFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKILFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=937970 V6C68_RS06795 WP_023350200.1 1379880..1380854(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365695]
ATGAAAATATTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATATTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.898 |
99.691 |
0.707 |
| comGA | Staphylococcus aureus N315 |
70.898 |
99.691 |
0.707 |