Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C55_RS06205 | Genome accession | NZ_CP145224 |
| Coordinates | 1280182..1281156 (+) | Length | 324 a.a. |
| NCBI ID | WP_047796322.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365701 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1275182..1286156
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C55_RS06170 (V6C55_06165) | rpmG | 1275692..1275841 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C55_RS06175 (V6C55_06170) | - | 1275993..1276544 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C55_RS06180 (V6C55_06175) | - | 1276545..1278008 (+) | 1464 | WP_367010116.1 | rhomboid family intramembrane serine protease | - |
| V6C55_RS06185 (V6C55_06180) | - | 1277989..1278192 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C55_RS06190 (V6C55_06185) | - | 1278189..1279175 (+) | 987 | WP_002433633.1 | ROK family glucokinase | - |
| V6C55_RS06195 (V6C55_06190) | - | 1279175..1279501 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C55_RS06200 (V6C55_06195) | - | 1279501..1280124 (+) | 624 | WP_047796323.1 | MBL fold metallo-hydrolase | - |
| V6C55_RS06205 (V6C55_06200) | comGA | 1280182..1281156 (+) | 975 | WP_047796322.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C55_RS06210 (V6C55_06205) | comGB | 1281128..1282195 (+) | 1068 | WP_047796321.1 | competence type IV pilus assembly protein ComGB | - |
| V6C55_RS06215 (V6C55_06210) | comGC | 1282214..1282525 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C55_RS06220 (V6C55_06215) | comGD | 1282503..1282952 (+) | 450 | WP_162488576.1 | competence type IV pilus minor pilin ComGD | - |
| V6C55_RS06225 (V6C55_06220) | - | 1282939..1283238 (+) | 300 | WP_002433765.1 | hypothetical protein | - |
| V6C55_RS06230 (V6C55_06225) | comGF | 1283156..1283647 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C55_RS06235 (V6C55_06230) | - | 1283817..1284326 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C55_RS06240 (V6C55_06235) | gcvT | 1284535..1285626 (+) | 1092 | WP_047796320.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37052.85 Da Isoelectric Point: 7.6989
>NTDB_id=937936 V6C55_RS06205 WP_047796322.1 1280182..1281156(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365701]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=937936 V6C55_RS06205 WP_047796322.1 1280182..1281156(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365701]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |