Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LmYK1_RS06070 Genome accession   NZ_AP025728
Coordinates   1247776..1249455 (-) Length   559 a.a.
NCBI ID   WP_004047607.1    Uniprot ID   A0A4Q2AVC7
Organism   Ligilactobacillus murinus strain YK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1242776..1254455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LmYK1_RS06035 (LmYK1_12060) - 1243318..1243605 (-) 288 WP_172477107.1 GIY-YIG nuclease family protein -
  LmYK1_RS06040 (LmYK1_12070) - 1243589..1244386 (-) 798 WP_338066285.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LmYK1_RS06045 (LmYK1_12080) - 1244553..1245179 (+) 627 WP_172477106.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LmYK1_RS06050 (LmYK1_12090) - 1245228..1245452 (-) 225 WP_004047611.1 YneF family protein -
  LmYK1_RS06055 (LmYK1_12100) - 1245533..1245829 (-) 297 WP_004047610.1 DUF896 domain-containing protein -
  LmYK1_RS06060 (LmYK1_12110) lexA 1245993..1246616 (+) 624 WP_004047608.1 transcriptional repressor LexA -
  LmYK1_RS06065 (LmYK1_12120) - 1246756..1247718 (+) 963 WP_286294440.1 IS30 family transposase -
  LmYK1_RS06070 (LmYK1_12130) recN 1247776..1249455 (-) 1680 WP_004047607.1 DNA repair protein RecN Machinery gene
  LmYK1_RS06075 (LmYK1_12140) - 1249514..1249972 (-) 459 WP_004047604.1 arginine repressor -
  LmYK1_RS06080 (LmYK1_12150) - 1249993..1250820 (-) 828 WP_135997939.1 TlyA family RNA methyltransferase -
  LmYK1_RS06085 (LmYK1_12160) - 1250835..1251713 (-) 879 WP_172477160.1 polyprenyl synthetase family protein -
  LmYK1_RS06090 (LmYK1_12170) - 1251818..1252045 (-) 228 WP_004047599.1 exodeoxyribonuclease VII small subunit -
  LmYK1_RS06095 (LmYK1_12180) xseA 1252042..1253385 (-) 1344 WP_172477159.1 exodeoxyribonuclease VII large subunit -
  LmYK1_RS06100 (LmYK1_12190) folD 1253385..1254233 (-) 849 WP_004047596.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63074.34 Da        Isoelectric Point: 4.5690

>NTDB_id=93784 LmYK1_RS06070 WP_004047607.1 1247776..1249455(-) (recN) [Ligilactobacillus murinus strain YK1]
MLQELMIRDFAIIDQLTVDFGTNMTVLTGETGAGKSIIIDALGLLAGGRGSSDFIRKGANKSLLQGQFTIPKATRTYELL
DEFGIECEDDILILQRDIYRSGKNVCRINGVLVNLGTLRQVGQTLIDIHGQNEHQELMDPERHLALVDNYQPEILAKLAQ
YQILYANYRRLSQALEQREKNAHEWAQRLDMLQFQVNEISEAQLHEGEEEELQEQKRQLDNYQTIHHALEMSYQALNGEE
LDVMSVLGNVMSELEDVAEFNSELAAIYEKVSDAFYNLQDVAHEVSGQLSDLEWDEELLNSIEARLETIHQLKRKYGDSI
ETILAYYDKIKRELETMQQSDENLEQQVEQVKEAHSKAKKLALEISELRKETAKRLEAEIHQQLSALYMDKAVFEVRFLP
ANGQLTETGLDRVEFYIQTNPGEEMGALARIASGGELSRIMLALKTIFAQNKGVTSIIFDEVDTGVSGRVAQAIAEKISQ
IATNSQVLCITHLPQVAAVADHHYFIAKHVANGRTETSLTILNDKERIEELARMLSGSSITTLTLEHAEELLKMAKEGK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=93784 LmYK1_RS06070 WP_004047607.1 1247776..1249455(-) (recN) [Ligilactobacillus murinus strain YK1]
TTGTTACAAGAATTAATGATCCGTGATTTTGCAATTATTGATCAGTTGACCGTCGATTTTGGAACGAATATGACGGTCTT
GACTGGTGAAACTGGGGCTGGTAAGTCCATCATTATTGATGCTTTAGGTCTACTAGCAGGTGGACGCGGCTCGAGTGATT
TTATCCGCAAGGGAGCTAATAAATCATTGCTCCAAGGACAATTTACTATCCCTAAAGCAACTCGAACATATGAGCTTTTA
GATGAATTTGGGATCGAATGTGAAGATGATATTTTGATCTTACAACGCGATATTTATCGCAGTGGCAAAAATGTTTGCCG
AATAAATGGCGTTTTGGTCAATCTAGGCACACTTCGGCAGGTGGGGCAAACATTGATCGATATCCATGGGCAAAATGAGC
ATCAAGAATTGATGGATCCTGAGCGTCATTTAGCTCTAGTCGATAATTATCAGCCTGAGATCTTAGCTAAATTAGCACAA
TATCAGATACTTTATGCCAATTATCGCCGTCTTTCTCAGGCACTAGAGCAACGTGAGAAAAATGCACATGAGTGGGCGCA
AAGACTTGATATGTTACAATTTCAAGTTAATGAGATCAGTGAGGCGCAGCTACATGAGGGTGAAGAAGAAGAGCTCCAAG
AACAAAAACGTCAATTAGATAATTATCAAACGATCCATCACGCGTTAGAGATGAGTTATCAAGCACTAAATGGTGAAGAA
TTAGATGTGATGAGTGTTCTAGGAAATGTCATGAGTGAGTTAGAAGACGTGGCTGAGTTCAATTCTGAATTAGCTGCGAT
CTACGAAAAGGTCTCTGATGCTTTCTATAATCTACAAGATGTAGCGCATGAAGTTTCAGGGCAATTAAGTGATCTGGAGT
GGGATGAAGAATTGTTAAATTCCATCGAAGCACGGCTTGAAACGATCCATCAACTCAAGCGTAAATATGGCGATTCGATC
GAAACGATCTTGGCTTATTACGATAAGATAAAACGCGAACTTGAAACGATGCAACAAAGCGATGAAAACTTAGAACAGCA
AGTCGAGCAGGTCAAAGAAGCTCATAGCAAGGCAAAAAAATTAGCGTTAGAGATCAGTGAGTTGCGTAAAGAGACTGCTA
AACGGCTTGAAGCTGAGATCCATCAGCAGTTGAGTGCACTATATATGGATAAAGCTGTTTTTGAAGTGCGATTTTTACCG
GCGAATGGACAATTGACTGAAACTGGCCTTGATCGGGTTGAATTTTACATTCAAACTAATCCCGGAGAAGAAATGGGGGC
TTTAGCAAGGATCGCTTCTGGTGGTGAATTATCGCGGATCATGCTCGCGCTAAAGACGATCTTTGCTCAAAATAAAGGTG
TGACGAGTATTATTTTCGATGAGGTCGATACTGGAGTCAGTGGACGTGTCGCACAAGCGATCGCTGAAAAAATCAGCCAG
ATCGCAACTAATTCGCAGGTGCTGTGTATCACCCACTTGCCACAGGTCGCGGCTGTGGCAGATCACCATTATTTTATTGC
TAAACATGTAGCCAATGGGCGGACTGAAACTTCGCTTACGATCTTAAATGATAAAGAACGGATCGAAGAACTAGCCCGGA
TGCTGTCAGGTTCTTCGATCACGACTTTGACACTAGAACATGCAGAAGAACTGCTAAAAATGGCTAAGGAAGGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q2AVC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.14

100

0.487

Multiple sequence alignment