Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   V6C92_RS00370 Genome accession   NZ_CP145216
Coordinates   74336..75964 (-) Length   542 a.a.
NCBI ID   WP_023350828.1    Uniprot ID   T1T072
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365753     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69336..80964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C92_RS00335 (V6C92_00335) - 70036..70671 (-) 636 WP_023350821.1 HXXEE domain-containing protein -
  V6C92_RS00340 (V6C92_00340) - 70676..71323 (-) 648 WP_023350822.1 TetR/AcrR family transcriptional regulator -
  V6C92_RS00345 (V6C92_00345) - 71333..71992 (-) 660 WP_023350823.1 HXXEE domain-containing protein -
  V6C92_RS00350 (V6C92_00350) - 72362..72583 (-) 222 WP_023350824.1 hypothetical protein -
  V6C92_RS00355 (V6C92_00355) - 72597..73106 (-) 510 WP_023350825.1 DUF1643 domain-containing protein -
  V6C92_RS00360 (V6C92_00360) - 73122..73433 (-) 312 WP_023350826.1 DUF960 family protein -
  V6C92_RS00365 (V6C92_00365) - 73520..73870 (-) 351 WP_023350827.1 SAUGI family uracil-DNA glycosylase inhibitor -
  V6C92_RS00370 (V6C92_00370) ccrB 74336..75964 (-) 1629 WP_023350828.1 cassette chromosome recombinase CcrB Machinery gene
  V6C92_RS00375 (V6C92_00375) ccrA 75985..77334 (-) 1350 WP_023350829.1 cassette chromosome recombinase CcrA Machinery gene
  V6C92_RS00380 (V6C92_00380) - 77512..77769 (-) 258 WP_023350830.1 hypothetical protein -
  V6C92_RS00385 (V6C92_00385) cch1 77834..79624 (-) 1791 WP_023350831.1 cassette chromosome replicative helicase -
  V6C92_RS00390 (V6C92_00390) - 79624..79773 (-) 150 WP_002434105.1 hypothetical protein -
  V6C92_RS00395 (V6C92_00395) - 79956..80957 (-) 1002 WP_049326370.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62691.59 Da        Isoelectric Point: 9.7324

>NTDB_id=937812 V6C92_RS00370 WP_023350828.1 74336..75964(-) (ccrB) [Staphylococcus capitis subsp. urealyticus strain Sc1365753]
MQQLKQKRVGIYVRVSTEIQNTEGYSINGQINQIRDYCQFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANTLNHKGYVTKKGKPFSISSITYILSNPFYMGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHAPIISQALWDKVQARKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIEFMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=937812 V6C92_RS00370 WP_023350828.1 74336..75964(-) (ccrB) [Staphylococcus capitis subsp. urealyticus strain Sc1365753]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTCCGTGTATCGACTGAAATCCAAAATACAGAAGGTTATAGTAT
TAATGGCCAAATCAATCAGATTAGAGACTACTGTCAATTTCACCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGACTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACTTCTTCTGGAAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTTGAACGTAATAACATTGTCGAGAACGTATTCATGGGCCAAACCAGACGTGCCCAAGAAGGCTATTATCAAGGAAAT
TTACCGCTAGGCTATGACAAAATACCCGACAGTAAACACGAATTGATGATTAATCAACATGAAGCTAATATTGTAAAATA
TATTTTCGAATCTTATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATACACTCAATCATAAAGGCTATGTCACTAAAA
AAGGGAAGCCTTTCAGTATAAGTTCTATTACTTATATTCTATCCAATCCCTTCTATATGGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAACGTCGTAAAGGACTGAATGATAAACCGATCATAGCTGAGGGTAAGCACGCCCCTATTAT
TAGCCAAGCATTATGGGATAAAGTGCAAGCACGTAAAAAGCAAGTCAGTCAAAAACCCCAAGTTCACGGTAAAGGAACTA
ATCTATTAACCGGTATCGTTCATTGTCCCCAATGCGGAGCACCTATGGCCGCGAGTAATACTACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTATCAAACAAGTTG
TCGAACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCGCTCAATCATGATATCGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATTCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

87.085

100

0.871