Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C87_RS06485 | Genome accession | NZ_CP145214 |
| Coordinates | 1264310..1265284 (+) | Length | 324 a.a. |
| NCBI ID | WP_367008366.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365754 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1259310..1270284
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C87_RS06450 (V6C87_06450) | rpmG | 1259823..1259972 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C87_RS06455 (V6C87_06455) | - | 1260121..1260672 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C87_RS06460 (V6C87_06460) | - | 1260673..1262136 (+) | 1464 | WP_023350197.1 | rhomboid family intramembrane serine protease | - |
| V6C87_RS06465 (V6C87_06465) | - | 1262117..1262320 (+) | 204 | WP_367008364.1 | YqgQ family protein | - |
| V6C87_RS06470 (V6C87_06470) | - | 1262317..1263303 (+) | 987 | WP_023350198.1 | ROK family glucokinase | - |
| V6C87_RS06475 (V6C87_06475) | - | 1263303..1263629 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C87_RS06480 (V6C87_06480) | - | 1263629..1264252 (+) | 624 | WP_367008365.1 | MBL fold metallo-hydrolase | - |
| V6C87_RS06485 (V6C87_06485) | comGA | 1264310..1265284 (+) | 975 | WP_367008366.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C87_RS06490 (V6C87_06490) | comGB | 1265256..1266323 (+) | 1068 | WP_064210116.1 | competence type IV pilus assembly protein ComGB | - |
| V6C87_RS06495 (V6C87_06495) | comGC | 1266342..1266653 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C87_RS06500 (V6C87_06500) | comGD | 1266631..1267080 (+) | 450 | WP_367008367.1 | competence type IV pilus minor pilin ComGD | - |
| V6C87_RS06505 (V6C87_06505) | - | 1267067..1267366 (+) | 300 | WP_002433765.1 | hypothetical protein | - |
| V6C87_RS06510 (V6C87_06510) | comGF | 1267284..1267775 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C87_RS06515 (V6C87_06515) | - | 1267942..1268454 (+) | 513 | WP_194380718.1 | shikimate kinase | - |
| V6C87_RS06520 (V6C87_06520) | gcvT | 1268664..1269755 (+) | 1092 | WP_367008368.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37044.84 Da Isoelectric Point: 7.7305
>NTDB_id=937796 V6C87_RS06485 WP_367008366.1 1264310..1265284(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365754]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVIHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVIHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=937796 V6C87_RS06485 WP_367008366.1 1264310..1265284(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365754]
ATGAAAATGTTATTTCAAGAGATAGTTAATTATGCTATAAAGCATGCTGCAAGTGATATACATTTTATTCCTACGGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTTCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATTCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACACAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACTGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTTCAAGAGATAGTTAATTATGCTATAAAGCATGCTGCAAGTGATATACATTTTATTCCTACGGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTTCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATTCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACACAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACTGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |