Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LmYK1_RS04025 Genome accession   NZ_AP025728
Coordinates   847615..849423 (+) Length   602 a.a.
NCBI ID   WP_286295308.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain YK1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 842615..854423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LmYK1_RS03995 (LmYK1_08010) nrdG 843120..843797 (+) 678 WP_135056681.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  LmYK1_RS04000 (LmYK1_08020) spxA 844154..844552 (+) 399 WP_004048229.1 transcriptional regulator SpxA -
  LmYK1_RS04005 (LmYK1_08030) - 844687..845436 (+) 750 WP_004048228.1 adaptor protein MecA -
  LmYK1_RS04010 (LmYK1_08040) - 845528..846139 (+) 612 WP_286295306.1 competence protein CoiA family protein -
  LmYK1_RS04015 (LmYK1_08050) - 846089..847051 (-) 963 WP_286294440.1 IS30 family transposase -
  LmYK1_RS04020 - 847160..847576 (+) 417 WP_286295307.1 hypothetical protein -
  LmYK1_RS04025 (LmYK1_08060) pepF 847615..849423 (+) 1809 WP_286295308.1 oligoendopeptidase F Regulator
  LmYK1_RS04030 (LmYK1_08070) - 849469..850098 (-) 630 WP_286295309.1 DsbA family protein -
  LmYK1_RS04035 (LmYK1_08080) - 850303..850932 (+) 630 WP_004048224.1 GTP pyrophosphokinase family protein -
  LmYK1_RS04040 (LmYK1_08090) - 850969..851787 (+) 819 WP_135942336.1 NAD kinase -
  LmYK1_RS04045 (LmYK1_08100) - 851765..852661 (+) 897 WP_112195445.1 RluA family pseudouridine synthase -
  LmYK1_RS04050 (LmYK1_08110) mgtE 852677..854044 (+) 1368 WP_004048221.1 magnesium transporter -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68392.21 Da        Isoelectric Point: 4.8387

>NTDB_id=93779 LmYK1_RS04025 WP_286295308.1 847615..849423(+) (pepF) [Ligilactobacillus murinus strain YK1]
MSEVTRLPKRSEVPLELTWDLTKIFATDAEFEEAFGQVVKAAEDFEQYKGTLENGAQAFLVALMAMLKLDRQLEVVYVYA
SMKNDEDTANAKYQALMARVQKLLADVSAKLAWFQPELLALAPEKLASYYQAEPRLNAYKTLVNDWTRLRAHVLSEKEEA
LLAGASDILGASANVFEVLNNADLKFPVVTDGSGSKVELSNGVYGKLLEATERPVRREAFEQLYTVYKQFRHTFAATLSA
HVRKHNFSAKLRNYQSAKEASLAQNNIPVAVYDTLVKTVNENLELLHDYVALRKDILGVDELHMYDMYTPLTGEPTLTFT
YEQAKKMTLEALSVLGEEYTTYVEKAFAERWIDVVANAGKRSGAYSGGAYDTAPYILLNWQDTLDNLFTLVHEMGHTMHS
YYTRTNQPYQYGDYSIFVAEIASTTNENLLTQYLLETQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEAWIHEQDASQV
PLTADLMSDFYSKLNQRYYGDAVENDPEIAYEWSRIPHFYYNFYVYQYATGFGAASTLAERVLDEEPAHTEAYLNYLKAG
SSAAPLEVMKKAGVDMTDSQYLEKAFGIFKERLAELKKLLAK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=93779 LmYK1_RS04025 WP_286295308.1 847615..849423(+) (pepF) [Ligilactobacillus murinus strain YK1]
ATGAGTGAAGTAACACGTCTACCAAAAAGATCAGAGGTGCCACTCGAGCTTACTTGGGATCTGACTAAGATCTTTGCGAC
TGATGCAGAATTTGAAGAAGCATTTGGGCAAGTTGTTAAAGCAGCTGAAGATTTTGAACAATACAAAGGAACATTAGAAA
ATGGGGCTCAAGCCTTTTTAGTTGCTCTAATGGCAATGCTTAAATTGGATCGTCAACTTGAAGTAGTTTATGTCTATGCA
AGCATGAAAAATGATGAGGATACTGCTAATGCTAAGTACCAAGCTTTGATGGCACGGGTCCAAAAGTTATTGGCTGATGT
TTCAGCTAAATTAGCTTGGTTTCAGCCTGAATTATTAGCTTTAGCACCAGAAAAATTAGCAAGCTATTATCAAGCTGAGC
CTAGATTGAATGCCTATAAAACATTAGTCAATGATTGGACTCGACTTCGCGCCCATGTCTTGAGTGAAAAAGAAGAAGCG
CTATTAGCAGGTGCAAGCGACATCTTAGGCGCTTCGGCTAATGTTTTTGAAGTTTTAAACAATGCTGATCTAAAATTTCC
CGTAGTAACTGATGGATCGGGTTCAAAAGTCGAGCTTTCAAATGGAGTCTACGGTAAATTGCTCGAAGCGACCGAGCGCC
CAGTTAGACGTGAAGCATTCGAACAGTTATACACTGTATATAAGCAGTTCAGACATACGTTTGCGGCTACCCTGTCTGCA
CATGTACGTAAGCATAATTTTTCAGCTAAATTACGTAATTATCAAAGTGCCAAGGAAGCTTCATTAGCCCAAAATAATAT
TCCAGTAGCTGTTTATGATACTTTAGTTAAAACAGTCAATGAAAATTTGGAGCTACTGCATGATTATGTAGCTTTACGTA
AGGATATCTTAGGTGTCGATGAGTTGCATATGTATGATATGTATACTCCCTTGACGGGTGAACCGACATTGACGTTTACT
TATGAGCAGGCTAAAAAGATGACCTTAGAGGCTTTGAGCGTCTTAGGCGAAGAATATACTACCTATGTAGAGAAGGCTTT
TGCTGAACGGTGGATCGATGTTGTTGCTAATGCAGGTAAGCGTTCGGGGGCCTATTCGGGTGGGGCCTATGATACTGCAC
CATATATTTTATTGAATTGGCAAGATACGCTAGATAATCTTTTTACATTAGTCCATGAGATGGGACACACGATGCACAGC
TACTATACACGGACTAATCAACCTTATCAATATGGGGATTATTCGATCTTTGTTGCTGAGATCGCATCAACGACAAACGA
AAACTTGTTGACCCAGTATTTGCTAGAGACCCAGACTGATCCTAAGGTACGGGCTTACGTATTGAATCACTATTTAGATG
GCTTTAAGGGAACCGTTTATCGGCAAACACAATTTGCTGAATTTGAAGCTTGGATCCATGAGCAAGATGCGTCACAAGTG
CCATTAACAGCAGATCTGATGTCAGATTTTTACAGTAAATTAAATCAACGCTACTATGGTGATGCAGTTGAAAATGACCC
AGAGATCGCATATGAATGGTCACGGATCCCGCATTTCTACTATAATTTCTATGTCTATCAATATGCAACTGGTTTTGGTG
CGGCCTCTACTTTAGCAGAGCGCGTCTTAGATGAAGAGCCTGCGCACACTGAAGCTTATTTGAACTACTTAAAAGCAGGT
AGTTCAGCGGCTCCATTAGAAGTAATGAAAAAAGCTGGTGTCGATATGACTGATAGTCAATATTTAGAGAAAGCTTTTGG
GATCTTTAAGGAACGTTTGGCTGAATTAAAAAAGCTATTAGCTAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.626

98.505

0.528

Multiple sequence alignment