Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   V6C87_RS04445 Genome accession   NZ_CP145214
Coordinates   873406..874122 (-) Length   238 a.a.
NCBI ID   WP_367009189.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365754     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 868406..879122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C87_RS04430 (V6C87_04435) - 869715..870665 (+) 951 WP_367009187.1 LacI family DNA-binding transcriptional regulator -
  V6C87_RS04435 (V6C87_04440) - 870900..872375 (+) 1476 WP_227940221.1 sucrose-6-phosphate hydrolase -
  V6C87_RS04440 (V6C87_04445) - 872382..873341 (+) 960 WP_367009188.1 carbohydrate kinase -
  V6C87_RS04445 (V6C87_04450) agrA 873406..874122 (-) 717 WP_367009189.1 quorum-sensing response regulator AgrA Regulator
  V6C87_RS04450 (V6C87_04455) agrC 874138..875427 (-) 1290 WP_367009190.1 quorum-sensing sensor histidine kinase AgrC -
  V6C87_RS04455 (V6C87_04460) agrD 875451..875591 (-) 141 WP_030063609.1 cyclic lactone autoinducer peptide AgrD -
  V6C87_RS04460 (V6C87_04465) - 875594..876160 (-) 567 WP_194381094.1 accessory gene regulator AgrB -
  V6C87_RS04465 - 876477..876554 (+) 78 WP_049307263.1 delta-lysin family phenol-soluble modulin -
  V6C87_RS04470 (V6C87_04470) - 876922..877707 (-) 786 WP_037551089.1 carbon-nitrogen family hydrolase -
  V6C87_RS04475 (V6C87_04475) - 877809..878435 (-) 627 WP_002436950.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27813.82 Da        Isoelectric Point: 5.4165

>NTDB_id=937785 V6C87_RS04445 WP_367009189.1 873406..874122(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1365754]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHAP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=937785 V6C87_RS04445 WP_367009189.1 873406..874122(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1365754]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGATATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGCCCCT
GTGGGTAACATTATTTTTGTAACAAGTCACAGCGAACTTACTTATCTCACTTTTGTTTATAAAGTGGCTGCTATGGATTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGATATTATG
TTCTTTGAATCTTCAACTAAGTCACACAGATTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTAGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGTTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

90.756

100

0.908