Detailed information NTG0093777

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: LmYK1_RS03495
• Genome accession: NZ_AP025728
• Coordinates: 747589..748425 (+)
• Length: 278 a.a.
• NCBI ID: WP_172477696.1
• Uniprot ID: -
• Organism: Ligilactobacillus murinus strain YK1
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 742589..753425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LmYK1_RS03470 (LmYK1_06980)	-	743607..743873 (+)	267	WP_004049336.1	hypothetical protein	-
LmYK1_RS03475 (LmYK1_06990)	-	744645..745031 (-)	387	WP_286295255.1	DUF1801 domain-containing protein	-
LmYK1_RS03480 (LmYK1_07000)	-	745099..745524 (+)	426	WP_286295258.1	N-acetyltransferase	-
LmYK1_RS03485 (LmYK1_07010)	-	745694..746341 (-)	648	WP_004049330.1	nitroreductase	-
LmYK1_RS03490 (LmYK1_07020)	asnA	746522..747529 (+)	1008	WP_172477695.1	aspartate--ammonia ligase	-
LmYK1_RS03495 (LmYK1_07030)	endA	747589..748425 (+)	837	WP_172477696.1	DNA/RNA non-specific endonuclease	Machinery gene
LmYK1_RS03500 (LmYK1_07040)	-	748425..748736 (+)	312	WP_004049323.1	hypothetical protein	-
LmYK1_RS03505 (LmYK1_07050)	-	748963..749838 (+)	876	WP_172477697.1	type II CAAX endopeptidase family protein	-
LmYK1_RS03510 (LmYK1_07060)	-	749970..750860 (+)	891	WP_004049319.1	ABC transporter ATP-binding protein	-
LmYK1_RS03515 (LmYK1_07070)	-	750844..751563 (+)	720	WP_004049317.1	ABC transporter permease	-
LmYK1_RS03520 (LmYK1_07080)	-	751565..751927 (+)	363	WP_172477698.1	hypothetical protein	-
LmYK1_RS03525 (LmYK1_07090)	-	751888..752691 (+)	804	WP_172477699.1	histidine kinase	-
LmYK1_RS03530 (LmYK1_07100)	-	752669..753274 (+)	606	WP_172477701.1	response regulator transcription factor	-

Sequence

Protein

• Length: 278 a.a.
• Molecular weight: 30313.95 Da
• Isoelectric Point: 10.5647

>NTDB_id=93777 LmYK1_RS03495 WP_172477696.1 747589..748425(+) (endA) [Ligilactobacillus murinus strain YK1]
MKFKKILTGFVAALMLSGAIGASVTAKATTHYGGWRTHQKNSSSGSGELKKSTPSQQLAQTVLTPDVVKQLGGEQNLKWN
NSGAFIVNNNKTGLKAKVSSAPYATNEVDSLKRPTVANALLNRTTRQYKNRHQTNNGSTKWKPQGFKQLTNLSGAYNHAY
DRGHLLGYALVGNIRGFDASESNSKNIATQTAWANEANAKYSTGQNYYESLVRKALDRNKTVRYRVTNVYSGNNLVPSGA
HLEAKASDGSLEYNVFIPNVQKGLKIDYATGHAIKENN

Nucleotide

• Length: 837 bp

>NTDB_id=93777 LmYK1_RS03495 WP_172477696.1 747589..748425(+) (endA) [Ligilactobacillus murinus strain YK1]
ATGAAGTTCAAAAAAATATTGACCGGATTTGTGGCAGCTTTGATGCTCAGTGGTGCGATCGGGGCATCGGTAACAGCTAA
AGCAACGACGCACTATGGTGGTTGGCGCACACATCAAAAAAATAGTTCGAGTGGCTCTGGTGAATTAAAAAAGAGCACTC
CATCACAACAATTAGCCCAAACGGTTTTGACGCCGGATGTTGTTAAACAATTAGGCGGTGAGCAAAATCTCAAATGGAAC
AACAGTGGGGCTTTTATCGTTAATAACAACAAGACAGGTTTAAAAGCTAAGGTTTCTAGTGCTCCTTATGCAACAAATGA
AGTCGATAGCTTAAAACGTCCGACGGTAGCCAATGCCCTTTTGAATAGGACAACACGGCAATATAAGAATCGCCACCAAA
CTAATAATGGTTCGACTAAATGGAAACCACAGGGCTTTAAGCAACTCACTAACTTAAGTGGCGCCTACAACCATGCTTAT
GATCGCGGACACTTACTAGGGTATGCTTTAGTGGGAAATATTCGTGGTTTTGATGCTAGTGAGAGCAATTCCAAAAATAT
TGCTACTCAGACAGCTTGGGCTAATGAAGCTAATGCAAAATATTCAACAGGTCAAAACTATTACGAAAGTCTTGTTCGAA
AAGCCTTAGATCGTAATAAGACTGTCCGTTATCGTGTGACAAATGTCTATAGCGGTAATAATTTAGTACCATCAGGCGCT
CATTTAGAAGCTAAAGCAAGTGATGGTTCGTTAGAGTATAATGTTTTTATCCCTAATGTTCAAAAGGGATTAAAGATCGA
CTATGCTACTGGTCATGCGATAAAGGAGAACAACTGA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (82-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	65.022	80.216	0.522
endA	Streptococcus pneumoniae D39	65.022	80.216	0.522
endA	Streptococcus pneumoniae R6	65.022	80.216	0.522
endA	Streptococcus pneumoniae TIGR4	65.022	80.216	0.522