Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   V6C56_RS04100 Genome accession   NZ_CP145208
Coordinates   866767..867483 (-) Length   238 a.a.
NCBI ID   WP_002436958.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1516939     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 861767..872483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C56_RS04085 (V6C56_04090) - 863085..864035 (+) 951 WP_037551080.1 LacI family DNA-binding transcriptional regulator -
  V6C56_RS04090 (V6C56_04095) - 864261..865736 (+) 1476 WP_049428100.1 sucrose-6-phosphate hydrolase -
  V6C56_RS04095 (V6C56_04100) - 865743..866702 (+) 960 WP_186334379.1 carbohydrate kinase -
  V6C56_RS04100 (V6C56_04105) agrA 866767..867483 (-) 717 WP_002436958.1 quorum-sensing response regulator AgrA Regulator
  V6C56_RS04105 (V6C56_04110) agrC 867499..868788 (-) 1290 WP_070597560.1 quorum-sensing sensor histidine kinase AgrC -
  V6C56_RS04110 (V6C56_04115) agrD 868811..868951 (-) 141 WP_049428106.1 cyclic lactone autoinducer peptide AgrD -
  V6C56_RS04115 (V6C56_04120) - 868954..869520 (-) 567 WP_049428109.1 accessory gene regulator AgrB -
  V6C56_RS04120 - 869837..869914 (+) 78 WP_049307263.1 delta-lysin family phenol-soluble modulin -
  V6C56_RS04125 (V6C56_04125) - 870282..871067 (-) 786 WP_037551089.1 carbon-nitrogen family hydrolase -
  V6C56_RS04130 (V6C56_04130) - 871169..871795 (-) 627 WP_049428113.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27857.83 Da        Isoelectric Point: 5.2308

>NTDB_id=937752 V6C56_RS04100 WP_002436958.1 866767..867483(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=937752 V6C56_RS04100 WP_002436958.1 866767..867483(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGATATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGACCCT
GTGGGTAACATTATTTTTGTAACAAGTCACAGCGAACTTACTTATCTCACTTTTGTTTATAAAGTGGCTGCTATGGACTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGATATTATG
TTCTTTGAATCTTCAACTAAGTCACACAGATTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTAGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGTTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

91.176

100

0.912