Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   R8947_RS03180 Genome accession   NZ_AP028371
Coordinates   639360..640313 (-) Length   317 a.a.
NCBI ID   WP_002839071.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10879     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 634360..645313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8947_RS03145 (B10879_06250) - 634544..634744 (+) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  R8947_RS03150 (B10879_06260) - 634774..635073 (-) 300 WP_002777238.1 cytochrome c -
  R8947_RS03155 (B10879_06270) - 635150..635713 (+) 564 WP_072214062.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  R8947_RS03160 (B10879_06280) rfaD 635710..636663 (+) 954 WP_002780616.1 ADP-glyceromanno-heptose 6-epimerase -
  R8947_RS03165 (B10879_06290) rfaE1 636656..638041 (+) 1386 WP_002786305.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  R8947_RS03170 (B10879_06300) gmhA 638038..638598 (+) 561 WP_002806601.1 D-sedoheptulose 7-phosphate isomerase -
  R8947_RS03175 (B10879_06310) - 638598..639353 (+) 756 WP_072214063.1 glycosyltransferase family 25 protein -
  R8947_RS03180 (B10879_06320) waaF 639360..640313 (-) 954 WP_002839071.1 glycosyltransferase family 9 protein Regulator
  R8947_RS03185 (B10879_06330) - 640372..641221 (+) 850 Protein_628 glycosyltransferase family 2 protein -
  R8947_RS03190 (B10879_06350) - 641599..641922 (-) 324 WP_072214065.1 hypothetical protein -
  R8947_RS03195 - 642433..642714 (-) 282 Protein_630 hypothetical protein -
  R8947_RS03200 (B10879_06370) - 642829..643770 (+) 942 WP_072214066.1 glycosyltransferase family 2 protein -
  R8947_RS03205 (B10879_06380) - 643758..644969 (+) 1212 WP_072214067.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36557.15 Da        Isoelectric Point: 10.2875

>NTDB_id=93775 R8947_RS03180 WP_002839071.1 639360..640313(-) (waaF) [Campylobacter coli strain BCH-10879]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=93775 R8947_RS03180 WP_002839071.1 639360..640313(-) (waaF) [Campylobacter coli strain BCH-10879]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAAGTAAAAACCGTGGCTATTTTTGGGCCTACCAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.631

99.054

0.927