Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACET1J_RS04140 Genome accession   NZ_CP168998
Coordinates   837306..837782 (-) Length   158 a.a.
NCBI ID   WP_025380661.1    Uniprot ID   -
Organism   Escherichia coli strain UTAK-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 832306..842782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1J_RS04110 (ACET1J_04110) - 834522..835364 (-) 843 WP_001280439.1 DUF4942 domain-containing protein -
  ACET1J_RS04115 (ACET1J_04115) - 835449..835646 (-) 198 WP_000839251.1 DUF957 domain-containing protein -
  ACET1J_RS04120 (ACET1J_04120) - 835658..836146 (-) 489 WP_001054226.1 DUF5983 family protein -
  ACET1J_RS04125 (ACET1J_04125) - 836143..836520 (-) 378 WP_373931987.1 TA system toxin CbtA family protein -
  ACET1J_RS04130 (ACET1J_04130) - 836567..836941 (-) 375 WP_000017094.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACET1J_RS04135 (ACET1J_04135) - 837016..837237 (-) 222 WP_001220316.1 DUF987 domain-containing protein -
  ACET1J_RS04140 (ACET1J_04140) radC 837306..837782 (-) 477 WP_025380661.1 DNA repair protein RadC Machinery gene
  ACET1J_RS04145 (ACET1J_04145) - 837798..838271 (-) 474 WP_000855084.1 antirestriction protein -
  ACET1J_RS04150 (ACET1J_04150) - 838409..838609 (-) 201 WP_001420888.1 hypothetical protein -
  ACET1J_RS04155 (ACET1J_04155) - 838609..839430 (-) 822 WP_001761104.1 DUF932 domain-containing protein -
  ACET1J_RS04160 (ACET1J_04160) - 839531..839765 (-) 235 Protein_817 DUF905 family protein -
  ACET1J_RS04165 (ACET1J_04165) - 839840..840295 (-) 456 WP_000581506.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17684.30 Da        Isoelectric Point: 7.2519

>NTDB_id=937740 ACET1J_RS04140 WP_025380661.1 837306..837782(-) (radC) [Escherichia coli strain UTAK-14]
MQQLSFLPGEMTPGERSLIHRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPGKTDRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=937740 ACET1J_RS04140 WP_025380661.1 837306..837782(-) (radC) [Escherichia coli strain UTAK-14]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCATCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCTGGTAAGACTGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392