Detailed information NTG0937740

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V6C60_RS12880
• Genome accession: NZ_CP145206
• Coordinates: 2596077..2596586 (-)
• Length: 169 a.a.
• NCBI ID: WP_023349922.1
• Uniprot ID: A0A7X9WHU6
• Organism: Staphylococcus capitis subsp. urealyticus strain Sc1516941
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2591077..2601586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6C60_RS12845 (V6C60_12790)	-	2592011..2592265 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
V6C60_RS12850 (V6C60_12800)	-	2592830..2593579 (-)	750	WP_367009445.1	amidohydrolase family protein	-
V6C60_RS12855 (V6C60_12805)	-	2593736..2593993 (+)	258	WP_002434565.1	helix-turn-helix domain-containing protein	-
V6C60_RS12860 (V6C60_12810)	-	2594064..2594417 (-)	354	WP_058121721.1	hypothetical protein	-
V6C60_RS12865 (V6C60_12815)	-	2594501..2595064 (-)	564	WP_037550921.1	DUF5067 domain-containing protein	-
V6C60_RS12870 (V6C60_12820)	-	2595206..2595460 (-)	255	WP_103157086.1	hypothetical protein	-
V6C60_RS12875 (V6C60_12825)	rpsR	2595788..2596030 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
V6C60_RS12880 (V6C60_12830)	ssbA	2596077..2596586 (-)	510	WP_023349922.1	single-stranded DNA-binding protein	Machinery gene
V6C60_RS12885 (V6C60_12835)	rpsF	2596608..2596904 (-)	297	WP_002434058.1	30S ribosomal protein S6	-
V6C60_RS12890 (V6C60_12840)	-	2597037..2597201 (-)	165	Protein_2463	recombinase family protein	-
V6C60_RS12895 (V6C60_12845)	-	2597316..2598062 (-)	747	WP_002434512.1	HAD family hydrolase	-
V6C60_RS12900 (V6C60_12850)	-	2598066..2598482 (-)	417	WP_227416285.1	NUDIX domain-containing protein	-
V6C60_RS12905 (V6C60_12855)	-	2598479..2599369 (-)	891	WP_058121568.1	DMT family transporter	-
V6C60_RS12910 (V6C60_12860)	-	2599369..2599752 (-)	384	WP_037550912.1	NUDIX hydrolase	-
V6C60_RS12915 (V6C60_12865)	-	2599765..2600442 (-)	678	WP_002434477.1	hypothetical protein	-
V6C60_RS12920 (V6C60_12870)	-	2600446..2601585 (-)	1140	WP_227416284.1	aminotransferase class V-fold PLP-dependent enzyme	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18672.18 Da
• Isoelectric Point: 4.5778

>NTDB_id=937740 V6C60_RS12880 WP_023349922.1 2596077..2596586(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=937740 V6C60_RS12880 WP_023349922.1 2596077..2596586(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTATGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A7X9WHU6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361