Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C60_RS08520 Genome accession   NZ_CP145206
Coordinates   1745539..1746411 (-) Length   290 a.a.
NCBI ID   WP_367009397.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1516941     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1740539..1751411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C60_RS08505 (V6C60_08485) xerC 1740826..1741716 (-) 891 WP_047796198.1 tyrosine recombinase XerC -
  V6C60_RS08510 (V6C60_08490) trmFO 1741953..1743260 (-) 1308 WP_030064791.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C60_RS08515 (V6C60_08495) topA 1743286..1745361 (-) 2076 WP_186306228.1 type I DNA topoisomerase -
  V6C60_RS08520 (V6C60_08500) dprA 1745539..1746411 (-) 873 WP_367009397.1 DNA-processing protein DprA Machinery gene
  V6C60_RS08525 (V6C60_08505) sucD 1746637..1747545 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  V6C60_RS08530 (V6C60_08510) sucC 1747567..1748733 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C60_RS08535 (V6C60_08515) - 1748841..1749611 (-) 771 WP_047796195.1 ribonuclease HII -
  V6C60_RS08540 (V6C60_08520) ylqF 1749595..1750478 (-) 884 Protein_1619 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33454.71 Da        Isoelectric Point: 9.6759

>NTDB_id=937733 V6C60_RS08520 WP_367009397.1 1745539..1746411(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNEMIEDWVKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNQLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYQPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSNYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=937733 V6C60_RS08520 WP_367009397.1 1745539..1746411(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATGAGATGATTGAGGATTGGGTTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACTTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTTGCACTAAAAAATCAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCATTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCAACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAAAGTAGTATTCTTTCAAACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

58.681

99.31

0.583
  dprA Staphylococcus aureus MW2

58.681

99.31

0.583