Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C60_RS07105 | Genome accession | NZ_CP145206 |
| Coordinates | 1419683..1420657 (+) | Length | 324 a.a. |
| NCBI ID | WP_047796322.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1516941 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1414683..1425657
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C60_RS07070 (V6C60_07060) | rpmG | 1415194..1415343 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C60_RS07075 (V6C60_07065) | - | 1415494..1416045 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C60_RS07080 (V6C60_07070) | - | 1416046..1417509 (+) | 1464 | WP_047796324.1 | rhomboid family intramembrane serine protease | - |
| V6C60_RS07085 (V6C60_07075) | - | 1417490..1417693 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C60_RS07090 (V6C60_07080) | - | 1417690..1418676 (+) | 987 | WP_002433633.1 | ROK family glucokinase | - |
| V6C60_RS07095 (V6C60_07085) | - | 1418676..1419002 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C60_RS07100 (V6C60_07090) | - | 1419002..1419625 (+) | 624 | WP_047796323.1 | MBL fold metallo-hydrolase | - |
| V6C60_RS07105 (V6C60_07095) | comGA | 1419683..1420657 (+) | 975 | WP_047796322.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C60_RS07110 (V6C60_07100) | comGB | 1420629..1421696 (+) | 1068 | WP_047796321.1 | competence type IV pilus assembly protein ComGB | - |
| V6C60_RS07115 (V6C60_07105) | comGC | 1421715..1422026 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C60_RS07120 (V6C60_07110) | comGD | 1422004..1422453 (+) | 450 | WP_162488576.1 | competence type IV pilus minor pilin ComGD | - |
| V6C60_RS07125 (V6C60_07115) | - | 1422440..1422739 (+) | 300 | WP_002433765.1 | hypothetical protein | - |
| V6C60_RS07130 (V6C60_07120) | comGF | 1422657..1423148 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C60_RS07135 (V6C60_07125) | - | 1423318..1423827 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C60_RS07140 (V6C60_07130) | gcvT | 1424036..1425127 (+) | 1092 | WP_047796320.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37052.85 Da Isoelectric Point: 7.6989
>NTDB_id=937727 V6C60_RS07105 WP_047796322.1 1419683..1420657(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=937727 V6C60_RS07105 WP_047796322.1 1419683..1420657(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |