Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   V6C60_RS05055 Genome accession   NZ_CP145206
Coordinates   1024501..1025217 (-) Length   238 a.a.
NCBI ID   WP_002436958.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1516941     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019501..1030217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C60_RS05040 (V6C60_05035) - 1020810..1021760 (+) 951 WP_047796491.1 LacI family DNA-binding transcriptional regulator -
  V6C60_RS05045 (V6C60_05040) - 1021995..1023470 (+) 1476 WP_047796490.1 sucrose-6-phosphate hydrolase -
  V6C60_RS05050 (V6C60_05045) - 1023477..1024436 (+) 960 WP_058121552.1 carbohydrate kinase family protein -
  V6C60_RS05055 (V6C60_05050) agrA 1024501..1025217 (-) 717 WP_002436958.1 quorum-sensing response regulator AgrA Regulator
  V6C60_RS05060 (V6C60_05055) agrC 1025233..1026522 (-) 1290 WP_047796488.1 quorum-sensing sensor histidine kinase AgrC -
  V6C60_RS05065 (V6C60_05060) agrD 1026544..1026684 (-) 141 WP_047797097.1 cyclic lactone autoinducer peptide AgrD -
  V6C60_RS05070 (V6C60_05065) - 1026687..1027253 (-) 567 WP_047796487.1 accessory gene regulator AgrB -
  V6C60_RS05075 (V6C60_13320) - 1027570..1027647 (+) 78 WP_049307263.1 delta-lysin family phenol-soluble modulin -
  V6C60_RS05080 (V6C60_05070) - 1028015..1028800 (-) 786 WP_047796486.1 carbon-nitrogen family hydrolase -
  V6C60_RS05085 (V6C60_05075) - 1028902..1029528 (-) 627 WP_367009620.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27857.83 Da        Isoelectric Point: 5.2308

>NTDB_id=937716 V6C60_RS05055 WP_002436958.1 1024501..1025217(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=937716 V6C60_RS05055 WP_002436958.1 1024501..1025217(-) (agrA) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGATATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGACCCT
GTGGGTAACATTATTTTTGTAACAAGTCACAGCGAACTTACTTATCTCACATTTGTTTATAAAGTGGCTGCTATGGATTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGATATTATG
TTCTTTGAATCTTCAACTAAGTCACACAGATTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTTGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGCTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

91.176

100

0.912