Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACET1B_RS18215 Genome accession   NZ_CP168991
Coordinates   3479988..3480572 (-) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli strain UTAK-8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3474988..3485572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1B_RS18200 (ACET1B_18200) helD 3475230..3477284 (-) 2055 WP_001297106.1 DNA helicase IV -
  ACET1B_RS18205 (ACET1B_18205) yccF 3477407..3477853 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACET1B_RS18210 (ACET1B_18210) yccS 3477863..3480025 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ACET1B_RS18215 (ACET1B_18215) sxy/tfoX 3479988..3480572 (-) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACET1B_RS18220 (ACET1B_18220) sulA 3480836..3481345 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACET1B_RS18225 (ACET1B_18225) ompA 3481702..3482742 (+) 1041 WP_001400178.1 porin OmpA -
  ACET1B_RS18230 (ACET1B_18230) matP 3482818..3483270 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACET1B_RS18235 (ACET1B_18235) ycbZ 3483456..3485216 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=937688 ACET1B_RS18215 WP_077825616.1 3479988..3480572(-) (sxy/tfoX) [Escherichia coli strain UTAK-8]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=937688 ACET1B_RS18215 WP_077825616.1 3479988..3480572(-) (sxy/tfoX) [Escherichia coli strain UTAK-8]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995