Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LLID5_RS11220 Genome accession   NZ_AP025701
Coordinates   2330695..2331723 (-) Length   342 a.a.
NCBI ID   WP_251918781.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2325695..2336723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS11200 (LLID5_22010) - 2326769..2327626 (-) 858 WP_058203259.1 Rgg/GadR/MutR family transcriptional regulator -
  LLID5_RS11205 (LLID5_22020) - 2327737..2328876 (-) 1140 WP_012898644.1 MFS transporter -
  LLID5_RS11210 (LLID5_22030) kwcM 2328873..2330192 (-) 1320 WP_251918779.1 KxxxW cyclic peptide radical SAM maturase -
  LLID5_RS11215 (LLID5_22040) - 2330260..2330373 (-) 114 WP_011836076.1 KxxxW-cyclized peptide pheromone -
  LLID5_RS11220 (LLID5_22050) sepM 2330695..2331723 (-) 1029 WP_251918781.1 SepM family pheromone-processing serine protease Regulator
  LLID5_RS11225 (LLID5_22060) coaD 2331710..2332207 (-) 498 WP_010906348.1 pantetheine-phosphate adenylyltransferase -
  LLID5_RS11230 (LLID5_22070) rsmD 2332255..2332794 (-) 540 WP_251918783.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LLID5_RS11235 (LLID5_22080) - 2332965..2334185 (-) 1221 WP_003132654.1 MFS transporter -
  LLID5_RS11240 (LLID5_22090) lmrP 2334267..2335493 (-) 1227 WP_251918786.1 multidrug efflux MFS transporter LmrP -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37349.96 Da        Isoelectric Point: 9.9183

>NTDB_id=93767 LLID5_RS11220 WP_251918781.1 2330695..2331723(-) (sepM) [Lactococcus lactis strain ID-5]
MKKNKKINPKIKWGISIGLIVVALLALFYPTSYYVEMPGTTEPLGKMVKVEGKKDEHKGDFFLTTVQIARANLATMIYSH
FNSFTSIYSEQEMTGGLNDAQFNRVNQFYMETAQNTAIYQAFKLANKPYELKYEGVYVLDIAKNSTFKNKLELADTITAV
NGQQFTSSADMIAYVSKQKVGDSVTIEYTRIDGTKHKSTGKYIKIANGKTGIGISLVDHTEVVTTPKVTVNAGSIGGPSA
GMMFTLEIYSQLTGKDLRNGREIAGTGTIEHDGSIGQIGGVDKKVATASKEGAKVFLVPDSGTKKESSNNYLGAKAAAKK
LKTKMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=93767 LLID5_RS11220 WP_251918781.1 2330695..2331723(-) (sepM) [Lactococcus lactis strain ID-5]
ATGAAAAAAAATAAAAAAATTAATCCCAAAATAAAATGGGGAATCTCGATTGGTCTAATTGTTGTTGCCCTTTTAGCTTT
ATTTTATCCAACGAGTTACTATGTGGAAATGCCCGGAACAACCGAGCCTTTAGGGAAAATGGTCAAAGTTGAAGGCAAAA
AAGATGAACATAAAGGTGATTTTTTCCTGACGACTGTCCAAATTGCACGAGCAAATCTTGCTACAATGATTTACAGCCAT
TTTAATAGTTTTACAAGCATTTATAGTGAGCAAGAAATGACTGGTGGACTTAACGACGCACAGTTCAACCGTGTCAACCA
GTTTTACATGGAAACGGCACAGAATACAGCGATTTATCAAGCTTTTAAATTAGCTAATAAACCTTATGAACTTAAATATG
AAGGCGTTTATGTCCTTGATATTGCCAAAAATTCGACCTTTAAAAATAAGCTAGAACTTGCAGATACGATTACAGCAGTC
AATGGTCAACAGTTTACATCAAGTGCCGACATGATTGCTTATGTTTCCAAACAAAAAGTCGGTGATTCAGTAACGATTGA
ATACACGAGAATTGACGGCACAAAGCACAAGTCAACTGGCAAATACATCAAAATTGCTAATGGAAAAACAGGAATTGGGA
TCAGCCTAGTTGACCATACTGAAGTCGTGACGACTCCAAAAGTTACTGTCAACGCGGGTTCAATCGGCGGTCCCTCTGCG
GGGATGATGTTTACACTAGAAATTTACAGTCAGTTGACAGGAAAAGATTTGCGAAACGGTCGCGAAATTGCTGGAACTGG
AACGATTGAACATGACGGAAGCATTGGCCAAATCGGCGGTGTTGATAAAAAAGTAGCCACAGCGAGCAAAGAAGGGGCAA
AGGTCTTCTTAGTGCCTGACTCAGGCACCAAAAAGGAAAGTAGCAACAATTACCTTGGAGCCAAAGCCGCAGCTAAAAAA
CTAAAAACGAAGATGAAAATCGTTCCCGTCAAAACTATTCAGGACGCTTTAGATTATTTAGAAAAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(227-338)

PDZ domain (PDZ_2)

(134-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.696

100

0.491

Multiple sequence alignment