Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACET1C_RS26690 Genome accession   NZ_CP168987
Coordinates   5315170..5316162 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain UTAK-10     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5310170..5321162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1C_RS26680 (ACET1C_26680) yieP 5313062..5313754 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  ACET1C_RS26685 (ACET1C_26685) mdtD 5313777..5315204 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  ACET1C_RS26690 (ACET1C_26690) cytR 5315170..5316162 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACET1C_RS26695 (ACET1C_26695) rbsK 5316166..5317095 (-) 930 WP_001435128.1 ribokinase -
  ACET1C_RS26700 (ACET1C_26700) rbsB 5317221..5318111 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACET1C_RS26705 (ACET1C_26705) rbsC 5318136..5319101 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACET1C_RS26710 (ACET1C_26710) rbsA 5319106..5320611 (-) 1506 WP_000387749.1 ribose ABC transporter ATP-binding protein RbsA -
  ACET1C_RS26715 (ACET1C_26715) rbsD 5320619..5321039 (-) 421 Protein_5218 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=937559 ACET1C_RS26690 WP_000224470.1 5315170..5316162(-) (cytR) [Escherichia coli strain UTAK-10]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=937559 ACET1C_RS26690 WP_000224470.1 5315170..5316162(-) (cytR) [Escherichia coli strain UTAK-10]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364