Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   V5F86_RS12325 Genome accession   NZ_CP145137
Coordinates   2442078..2442881 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2437078..2447881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS12295 (V5F86_12300) - 2438138..2438869 (-) 732 WP_326198311.1 glycerophosphodiester phosphodiesterase -
  V5F86_RS12300 (V5F86_12305) - 2438949..2439569 (-) 621 WP_268456012.1 N-acetylmuramoyl-L-alanine amidase -
  V5F86_RS12305 (V5F86_12310) - 2439588..2439884 (-) 297 WP_014114342.1 hypothetical protein -
  V5F86_RS12310 (V5F86_12315) - 2440210..2440344 (+) 135 WP_003236876.1 hypothetical protein -
  V5F86_RS12315 (V5F86_12320) - 2440417..2441535 (+) 1119 WP_268392633.1 NADH-dependent flavin oxidoreductase -
  V5F86_RS12320 (V5F86_12325) - 2441752..2441931 (-) 180 WP_268456013.1 hypothetical protein -
  V5F86_RS12325 (V5F86_12330) spo0A 2442078..2442881 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  V5F86_RS12330 (V5F86_12335) spoIVB 2443159..2444439 (-) 1281 WP_014114356.1 SpoIVB peptidase -
  V5F86_RS12335 (V5F86_12340) recN 2444613..2446343 (-) 1731 WP_061186894.1 DNA repair protein RecN Machinery gene
  V5F86_RS12340 (V5F86_12345) argR 2446379..2446828 (-) 450 WP_014114358.1 arginine repressor ArgR -
  V5F86_RS12345 (V5F86_12350) - 2446925..2447770 (-) 846 WP_072566534.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=937415 V5F86_RS12325 WP_003226427.1 2442078..2442881(-) (spo0A) [Bacillus spizizenii strain kcgeb_sc]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=937415 V5F86_RS12325 WP_003226427.1 2442078..2442881(-) (spo0A) [Bacillus spizizenii strain kcgeb_sc]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGATGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCTTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACACATCCGCCAAGTCAGCGGAAATGCCAGCAGCGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGTATTACAAAAGTCCTTTATCCGGACATCGCTAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATCTCCTCGCTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAGCCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTTAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1