Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   V5F86_RS07670 Genome accession   NZ_CP145137
Coordinates   1494750..1495334 (+) Length   194 a.a.
NCBI ID   WP_061187376.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489750..1500334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS07640 (V5F86_07645) dapD 1489935..1490645 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  V5F86_RS07645 (V5F86_07650) - 1490715..1491839 (+) 1125 WP_338444275.1 N-acetyldiaminopimelate deacetylase -
  V5F86_RS07650 (V5F86_07655) - 1491901..1492146 (+) 246 WP_003218684.1 YkuS family protein -
  V5F86_RS07655 (V5F86_07660) mscT 1492182..1492985 (-) 804 WP_061187375.1 small-conductance mechanosensitive channel protein MscT -
  V5F86_RS07660 (V5F86_07665) ahpA 1493229..1493771 (+) 543 WP_338444276.1 biofilm-specific peroxidase AhpA -
  V5F86_RS07665 (V5F86_07670) ykuV 1493841..1494299 (+) 459 WP_014113626.1 thiol-disulfide oxidoreductase YkuV -
  V5F86_RS07670 (V5F86_07675) rok 1494750..1495334 (+) 585 WP_061187376.1 transcriptional regulator Rok Regulator
  V5F86_RS07675 (V5F86_07680) - 1495375..1496340 (-) 966 WP_268442749.1 sporulation protein -
  V5F86_RS07680 (V5F86_07685) - 1496476..1497093 (+) 618 WP_338444278.1 molybdenum cofactor guanylyltransferase -
  V5F86_RS07685 (V5F86_07690) - 1497125..1498144 (+) 1020 WP_338444279.1 molybdopterin-synthase adenylyltransferase MoeB -
  V5F86_RS07690 (V5F86_07695) glp 1498162..1499454 (+) 1293 WP_014113632.1 gephyrin-like molybdotransferase Glp -
  V5F86_RS07695 (V5F86_07700) mobB 1499415..1499948 (+) 534 WP_014113633.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22113.10 Da        Isoelectric Point: 9.7036

>NTDB_id=937408 V5F86_RS07670 WP_061187376.1 1494750..1495334(+) (rok) [Bacillus spizizenii strain kcgeb_sc]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESAESAND

Nucleotide


Download         Length: 585 bp        

>NTDB_id=937408 V5F86_RS07670 WP_061187376.1 1494750..1495334(+) (rok) [Bacillus spizizenii strain kcgeb_sc]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTAGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGGACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCCATTAAAACATTAAAACGCCACAATGCGG
CGATTAAGAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATTGAATCAGCTGA
ATCTGCAGAATCAGCAAATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

97.423

0.974