Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   V5F86_RS07570 Genome accession   NZ_CP145137
Coordinates   1478899..1479363 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473899..1484363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS07550 (V5F86_07555) kinA 1474367..1476187 (+) 1821 WP_338444270.1 sporulation histidine kinase KinA -
  V5F86_RS07555 (V5F86_07560) - 1476197..1477378 (-) 1182 WP_003218653.1 aminotransferase A -
  V5F86_RS07560 (V5F86_07565) - 1477580..1477741 (-) 162 WP_003218655.1 hypothetical protein -
  V5F86_RS07565 (V5F86_07570) cheV 1477947..1478858 (+) 912 WP_338444271.1 chemotaxis protein CheV -
  V5F86_RS07570 (V5F86_07575) kre 1478899..1479363 (-) 465 WP_003232406.1 YkyB family protein Regulator
  V5F86_RS07575 (V5F86_07580) - 1479488..1480780 (-) 1293 WP_326199056.1 MFS transporter -
  V5F86_RS07580 (V5F86_07585) - 1480856..1481350 (-) 495 WP_268454170.1 L,D-transpeptidase family protein -
  V5F86_RS07585 (V5F86_07590) - 1481407..1482267 (-) 861 WP_114150604.1 metallophosphoesterase -
  V5F86_RS07590 (V5F86_07595) fadH 1482409..1483173 (+) 765 WP_014113617.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=937407 V5F86_RS07570 WP_003232406.1 1478899..1479363(-) (kre) [Bacillus spizizenii strain kcgeb_sc]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=937407 V5F86_RS07570 WP_003232406.1 1478899..1479363(-) (kre) [Bacillus spizizenii strain kcgeb_sc]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATACCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAACCCAAGGTTTAGCCAACAGCAATCGGACGTGCTTATTTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTGTTGCAAGAATATGTCGGCATGAAAGAAAAACCGCTTGTGC
CAAATCGCCAGCAGCCAGCTTATCATAAACCTGTTTTTAAAAAGCTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1