Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8621_RS06560 Genome accession   NZ_AP028370
Coordinates   1284083..1285051 (+) Length   322 a.a.
NCBI ID   WP_087700295.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10767     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279083..1290051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8621_RS06550 (B10767_12930) - 1280284..1282104 (+) 1821 WP_308043178.1 motility associated factor glycosyltransferase family protein -
  R8621_RS06555 (B10767_12940) - 1282180..1283916 (+) 1737 WP_249624121.1 flagellin A -
  R8621_RS06560 (B10767_12950) ceuB 1284083..1285051 (+) 969 WP_087700295.1 ABC transporter permease Machinery gene
  R8621_RS06565 (B10767_12960) ceuC 1285044..1285982 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  R8621_RS06570 (B10767_12970) ceuD 1285979..1286734 (+) 756 WP_002871403.1 ABC transporter ATP-binding protein -
  R8621_RS06575 (B10767_12980) ceuB 1286747..1287736 (+) 990 WP_249623907.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8621_RS06580 (B10767_12990) - 1287892..1288113 (+) 222 WP_002853781.1 hypothetical protein -
  R8621_RS06585 (B10767_13000) - 1288114..1288395 (+) 282 WP_002853938.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R8621_RS06595 (B10767_13010) - 1288756..1289310 (-) 555 WP_002854110.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35471.37 Da        Isoelectric Point: 9.6678

>NTDB_id=93740 R8621_RS06560 WP_087700295.1 1284083..1285051(+) (ceuB) [Campylobacter jejuni strain BCH-10767]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGVSFFTQAVIASVFALLGSFIFIQILRKIKLKDAIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDITLNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=93740 R8621_RS06560 WP_087700295.1 1284083..1285051(+) (ceuB) [Campylobacter jejuni strain BCH-10767]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAATTAGAAATCATAACGCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGTATACTTATTTCTTTAATATTTTTTACTGGAGTGTC
TTTTTTTACTCAAGCTGTCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGCGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGCGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTATATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAACTTTAAATCTTGGAATTTCTTATAATGGCATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.137

100

0.981

Multiple sequence alignment