Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DBT43_RS00365 Genome accession   NZ_CP145136
Coordinates   77765..79153 (+) Length   462 a.a.
NCBI ID   WP_060777521.1    Uniprot ID   A0A0X8FD21
Organism   Aerococcus urinae strain UMB0722     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72765..84153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBT43_RS00345 (DBT43_0000345) pgeF 72768..73541 (-) 774 WP_060777518.1 peptidoglycan editing factor PgeF -
  DBT43_RS00350 (DBT43_0000350) - 73718..76645 (+) 2928 WP_060777519.1 insulinase family protein -
  DBT43_RS00355 (DBT43_0000355) - 76872..77057 (-) 186 WP_060777520.1 hypothetical protein -
  DBT43_RS00360 (DBT43_0000360) - 77226..77735 (+) 510 WP_060779033.1 dUTP diphosphatase -
  DBT43_RS00365 (DBT43_0000365) radA 77765..79153 (+) 1389 WP_060777521.1 DNA repair protein RadA Machinery gene
  DBT43_RS00370 (DBT43_0000370) - 79240..80412 (+) 1173 WP_060777522.1 PIN/TRAM domain-containing protein -
  DBT43_RS00375 (DBT43_0000375) - 80523..81338 (-) 816 WP_060777523.1 Cof-type HAD-IIB family hydrolase -
  DBT43_RS00380 (DBT43_0000380) - 81506..82207 (+) 702 WP_060777524.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50410.62 Da        Isoelectric Point: 6.5105

>NTDB_id=937358 DBT43_RS00365 WP_060777521.1 77765..79153(+) (radA) [Aerococcus urinae strain UMB0722]
MAKKKRKTVYTCQACGYESPQWYGKCPQCGAWNTLEEEVIAGKPIRQAGTEVNQKKAKPERLKEVSQAEEKRVKTGLGEF
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVAKQLSDNGSRGLYVSGEESLHQIKMRADRLGYHDADFFVYAETDLLAIE
AAISDTQADFVVIDSIQTMVHPNNESLAGSVSQVREATGELMHIAKSSGIAIFVVGHVTKEGNIAGPRILEHMVDTVLYL
EGEKHNTFRILRAVKNRFGSTNEIGVFDMKSQGLEEVTNPSQLFLEERLMGANGSAVVASMEGTRPILTEIQALLSATAF
GNARRTASGLDYSRVTLIMAVLEKRAHLMLQNQDAYLKSTGGVKLDEPAIDLAIAVAVASSYWEKETQASDCFVGEIGLT
GEIRRISRINERIQEAEKLGFKRIFIPYGNLQGLAIDSQDIEIIGAKTLTQVLKEVFPPQGR

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=937358 DBT43_RS00365 WP_060777521.1 77765..79153(+) (radA) [Aerococcus urinae strain UMB0722]
ATGGCTAAAAAGAAGCGAAAAACCGTCTATACTTGCCAGGCCTGTGGTTATGAATCGCCCCAGTGGTATGGGAAATGTCC
CCAGTGTGGAGCGTGGAATACCCTGGAAGAGGAAGTGATTGCGGGTAAGCCCATCCGCCAAGCTGGGACAGAGGTCAATC
AGAAAAAAGCCAAGCCTGAACGCCTCAAGGAAGTCAGCCAGGCGGAAGAAAAACGGGTAAAGACTGGCCTAGGCGAATTT
AACCGAGTCCTCGGTGGCGGGGTAGTCCCTGGCTCCTTGGTCCTGATTGGTGGTGATCCTGGTATTGGGAAGTCGACCCT
GCTCCTCCAGGTGGCTAAGCAATTAAGTGATAATGGTAGTCGGGGCCTCTATGTTTCTGGGGAAGAAAGTTTGCATCAAA
TCAAGATGCGGGCTGACCGCTTAGGCTACCACGATGCGGATTTCTTTGTTTATGCCGAAACCGACCTCTTAGCCATTGAA
GCGGCTATTTCTGATACCCAGGCGGATTTTGTGGTGATTGACTCCATCCAAACCATGGTCCATCCCAATAATGAATCTTT
AGCCGGTAGTGTCAGCCAGGTCAGAGAAGCGACCGGAGAACTCATGCATATCGCCAAAAGTTCTGGAATCGCCATCTTTG
TAGTCGGCCATGTGACCAAGGAAGGTAATATTGCCGGACCGCGGATTCTCGAACATATGGTGGACACGGTTTTATACTTG
GAAGGGGAGAAGCACAACACTTTCCGGATCCTAAGAGCGGTCAAAAACCGTTTTGGGTCGACCAATGAAATCGGCGTTTT
TGACATGAAAAGTCAGGGCCTAGAAGAGGTCACCAACCCTAGCCAGCTCTTTTTAGAAGAACGGCTCATGGGAGCCAATG
GGTCGGCAGTGGTTGCATCGATGGAAGGCACCCGGCCCATCCTAACCGAAATCCAAGCCCTCTTGTCGGCCACGGCCTTT
GGTAATGCCCGTCGTACGGCCAGTGGTTTGGACTATTCCCGGGTGACCCTCATTATGGCGGTCTTAGAGAAGCGGGCCCA
TCTCATGCTGCAGAACCAAGATGCCTACCTCAAGTCAACCGGTGGGGTTAAACTGGATGAACCAGCTATTGATCTGGCTA
TTGCTGTGGCGGTGGCTTCCAGTTACTGGGAGAAGGAGACCCAGGCCAGCGATTGCTTTGTGGGGGAGATTGGCTTGACA
GGTGAAATTCGTCGGATTTCCCGGATTAATGAACGGATCCAAGAGGCGGAAAAATTAGGCTTTAAACGAATTTTTATCCC
TTATGGTAACCTGCAAGGGCTAGCGATTGATAGTCAAGACATTGAAATTATTGGTGCCAAGACCCTGACCCAAGTTCTTA
AAGAAGTCTTTCCCCCTCAAGGGAGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8FD21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

62.914

98.052

0.617
  radA Streptococcus pneumoniae D39

62.914

98.052

0.617
  radA Streptococcus pneumoniae R6

62.914

98.052

0.617
  radA Streptococcus pneumoniae Rx1

62.914

98.052

0.617
  radA Streptococcus mitis SK321

62.914

98.052

0.617
  radA Bacillus subtilis subsp. subtilis str. 168

62.281

98.701

0.615
  radA Streptococcus mitis NCTC 12261

62.693

98.052

0.615