Detailed information NTG0937268

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACET1H_RS05325
• Genome accession: NZ_CP168979
• Coordinates: 1080556..1081548 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain UTME-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1075556..1086548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACET1H_RS05295 (ACET1H_05295)	ispD	1075617..1076327 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACET1H_RS05300 (ACET1H_05300)	ispF	1076327..1076806 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACET1H_RS05305 (ACET1H_05305)	truD	1076803..1077852 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
ACET1H_RS05310 (ACET1H_05310)	surE	1077833..1078594 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACET1H_RS05315 (ACET1H_05315)	pcm	1078588..1079214 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACET1H_RS05320 (ACET1H_05320)	nlpD	1079399..1080493 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
ACET1H_RS05325 (ACET1H_05325)	rpoS	1080556..1081548 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACET1H_RS05330 (ACET1H_05330)	-	1081668..1082075 (-)	408	WP_000175365.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACET1H_RS05335 (ACET1H_05335)	-	1082222..1082815 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACET1H_RS05340 (ACET1H_05340)	-	1082815..1084036 (+)	1222	Protein_1048	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACET1H_RS05345 (ACET1H_05345)	-	1085185..1085361 (-)	177	WP_373966167.1	hypothetical protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=937268 ACET1H_RS05325 WP_000081550.1 1080556..1081548(+) (rpoS) [Escherichia coli strain UTME-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=937268 ACET1H_RS05325 WP_000081550.1 1080556..1081548(+) (rpoS) [Escherichia coli strain UTME-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715