Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G15_RS02335 Genome accession   NZ_CP145090
Coordinates   450035..450646 (+) Length   203 a.a.
NCBI ID   WP_082284944.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_A_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445035..455646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G15_RS02310 (V5G15_02315) - 445480..446061 (-) 582 WP_033910016.1 superoxide dismutase -
  V5G15_RS02315 (V5G15_02320) dnaB 446225..447631 (+) 1407 WP_082284947.1 replicative DNA helicase -
  V5G15_RS02320 (V5G15_02325) pilH 447786..448448 (+) 663 WP_082284956.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G15_RS02325 (V5G15_02330) pilI 448480..449088 (+) 609 WP_082284946.1 type IV pilus modification protein PilV Machinery gene
  V5G15_RS02330 (V5G15_02335) pilJ 449085..450056 (+) 972 WP_082284945.1 PilW family protein Machinery gene
  V5G15_RS02335 (V5G15_02340) pilK 450035..450646 (+) 612 WP_082284944.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G15_RS02340 (V5G15_02345) pilL 450648..451121 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5G15_RS02345 (V5G15_02350) - 451191..451499 (-) 309 WP_003706588.1 AzlD family protein -
  V5G15_RS02350 (V5G15_02355) - 451496..452207 (-) 712 Protein_458 AzlC family ABC transporter permease -
  V5G15_RS02355 (V5G15_02360) dut 452349..452801 (+) 453 WP_050157376.1 dUTP diphosphatase -
  V5G15_RS02360 (V5G15_02365) dapC 452877..454064 (+) 1188 WP_082284943.1 succinyldiaminopimelate transaminase -
  V5G15_RS02365 (V5G15_02370) yaaA 454220..454999 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22007.93 Da        Isoelectric Point: 8.4501

>NTDB_id=937176 V5G15_RS02335 WP_082284944.1 450035..450646(+) (pilK) [Neisseria gonorrhoeae strain WHO_A_2024]
MRKQNTLTGIPTSEGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGSEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=937176 V5G15_RS02335 WP_082284944.1 450035..450646(+) (pilK) [Neisseria gonorrhoeae strain WHO_A_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCTTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAG
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956