Detailed information NTG0937092

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AAH690_RS03915
• Genome accession: NZ_CP168949
• Coordinates: 767268..768260 (-)
• Length: 330 a.a.
• NCBI ID: WP_000224476.1
• Uniprot ID: A7ZTW4
• Organism: Escherichia coli strain IH5
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 762268..773260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH690_RS03895 (AAH690_03895)	-	763482..763640 (+)	159	WP_000651752.1	DUF1427 family protein	-
AAH690_RS03900 (AAH690_03900)	xapR	763681..764565 (+)	885	WP_001341600.1	DNA-binding transcriptional regulator XapR	-
AAH690_RS03905 (AAH690_03905)	yieP	765160..765852 (+)	693	WP_001131169.1	FadR/GntR family transcriptional regulator	-
AAH690_RS03910 (AAH690_03910)	mdtD	765875..767302 (+)	1428	WP_001280887.1	multidrug transporter subunit MdtD	-
AAH690_RS03915 (AAH690_03915)	cytR	767268..768260 (-)	993	WP_000224476.1	ribose operon transcriptional repressor RbsR	Regulator
AAH690_RS03920 (AAH690_03920)	rbsK	768264..769193 (-)	930	WP_001300603.1	ribokinase	-
AAH690_RS03925 (AAH690_03925)	rbsB	769319..770209 (-)	891	WP_001056273.1	ribose ABC transporter substrate-binding protein RbsB	-
AAH690_RS03930 (AAH690_03930)	rbsC	770234..771199 (-)	966	WP_000211858.1	ribose ABC transporter permease	-
AAH690_RS03935 (AAH690_03935)	rbsA	771204..772709 (-)	1506	WP_000387756.1	ribose ABC transporter ATP-binding protein RbsA	-
AAH690_RS03940 (AAH690_03940)	rbsD	772717..773136 (-)	420	WP_001364631.1	D-ribose pyranase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 36584.88 Da
• Isoelectric Point: 5.2141

>NTDB_id=937092 AAH690_RS03915 WP_000224476.1 767268..768260(-) (cytR) [Escherichia coli strain IH5]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide

• Length: 993 bp

>NTDB_id=937092 AAH690_RS03915 WP_000224476.1 767268..768260(-) (cytR) [Escherichia coli strain IH5]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A7ZTW4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	37.349	100	0.376
cytR	Vibrio cholerae C6706	39.088	93.03	0.364