Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   V5G10_RS01910 Genome accession   NZ_CP145086
Coordinates   362228..365830 (-) Length   1200 a.a.
NCBI ID   WP_003690825.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_C_2024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 357228..370830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G10_RS01890 (V5G10_01890) - 358107..359231 (-) 1125 WP_003698140.1 DNA cytosine methyltransferase -
  V5G10_RS01895 (V5G10_01895) radA 359573..360952 (+) 1380 WP_003690821.1 DNA repair protein RadA Machinery gene
  V5G10_RS01900 (V5G10_01900) - 361227..361718 (-) 492 WP_082299575.1 DUF302 domain-containing protein -
  V5G10_RS01905 (V5G10_01905) - 361830..362189 (-) 360 WP_003687781.1 rhodanese-like domain-containing protein -
  V5G10_RS01910 (V5G10_01910) recB 362228..365830 (-) 3603 WP_003690825.1 exodeoxyribonuclease V subunit beta Machinery gene
  V5G10_RS01915 (V5G10_01915) - 365907..366815 (-) 909 WP_010357322.1 Dyp-type peroxidase -
  V5G10_RS01920 (V5G10_01920) - 367100..367927 (+) 828 WP_003690826.1 amino acid ABC transporter substrate-binding protein -
  V5G10_RS01925 (V5G10_01925) - 367917..368633 (+) 717 WP_003687787.1 amino acid ABC transporter permease -
  V5G10_RS01930 (V5G10_01930) - 368643..369398 (+) 756 WP_003687790.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1200 a.a.        Molecular weight: 134185.71 Da        Isoelectric Point: 5.6273

>NTDB_id=937078 V5G10_RS01910 WP_003690825.1 362228..365830(-) (recB) [Neisseria gonorrhoeae strain WHO_C_2024]
MSAPIRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLVPAQDFWRERVSGDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLKQAQRDAETS
WQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHERLLKLSSDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETPARAVAEN
WEIALIDEFQDTDPLQYEIFQKIFIARNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKANKDVLRRRAADYCADEIARALNEASGGRLNF
KGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDA
QQLHDFNQNESEILHWAESARTALDIWQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAELLAKAQ
LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRRTYACEKDGITMLKRNW
RRVADNAPAGTDFAFTEDAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICII
DYKSNHLSAYTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAALEQIK

Nucleotide


Download         Length: 3603 bp        

>NTDB_id=937078 V5G10_RS01910 WP_003690825.1 362228..365830(-) (recB) [Neisseria gonorrhoeae strain WHO_C_2024]
ATGTCCGCACCCATCCGAGCATTCGACCCGCTGACCGCCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTGATCGTATTGGAACAAAAAAGCGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACTGCCGAGCTGAAAACACGCCTGCGCGCGCGTTTGGACGATGTGTTGCAGGTTTTGGAA
AGCAAAGAAATTGCCGAACTTGGAGACGACACGCTTTCAGACGGCATTGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGCACTCTTGGAACAGGCTTTGCAAAAAGAAAGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCTCAAGATTTTTGGCGGGAACG
CGTCAGCGGCGACCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCGACGCCGAAACCTCA
TGGCAAACCGTCTGCCGCCTGCTGCCCGAGCTGGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACGCACGAACGGCTCTTGAAACTCTCATCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATATCTCAACAGCAGCCTTGCCGAAATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCCCGCCCGCGCCGTTGCCGAAAAC
TGGGAAATCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAGATTTTCATCGCCCG
AAACCGCCCGCTGTTCCTCGTCGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATCGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGTTGTCGCCCAAACGTCCTGCCGTACAGCTCCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCGCGCGCTCAACGAAGCCTCCGGAGGCCGTCTGAATTTC
AAAGGCCGCCCGTTGCAGTCGGGCGATATTGCCGTTCTGGTACGCACGCACAACGAGGCGGTGATGATTTCCGCCGCACT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCGC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCGGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACATATG
GCAAAAATACGGCATTTTCGCCGCTATGCAGCAGTTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCA
CTGCACAAATGGCTGCGCGATCAAATCAGCCTGGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTTTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGACCGTCCGACTGGCAAATCCTCCACCAAGGCGCAAACCGGGCCGAACTTTTGGCAAAGGCGCAA
CTGTCGGAAAGCGAACAGAAGCAATACGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTTGCCTACCTGATCGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCGTACCTATGCGTGTGAAAAAGACGGCATAACGATGCTCAAACGCAACTGG
CGGCGCGTGGCGGACAATGCCCCGGCCGGCACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGATCAAGCCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCGGATTCCGATTTGTCCGCCACACCAGCTTCA
CCGCCTTAAGCCGCCAAACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGACTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGAACAGGAAACCCTCATTGCCGACAAGC
TGAAAAAATACGGTTTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACT
GGGGCATACGGCCTGTCCGACATCCCGCCCGGGTGCCGCCGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGCTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCCGCCGAGACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCATCATC
GACTACAAATCCAACCACCTATCCGCCTACACGCGGCAGGCGATGGACGAAGCCGTCGCGCACCAGCACTATTACCTTCA
GGCACTGATTTACGCCGTTGCCGCCGCGCGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTTCCGTCCGCTACC
TGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTGGAACAGATAAAA
TAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

99.583

100

0.996