Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G00_RS02345 Genome accession   NZ_CP145080
Coordinates   452475..453083 (+) Length   202 a.a.
NCBI ID   WP_003690900.1    Uniprot ID   A0AB74EBN2
Organism   Neisseria gonorrhoeae strain WHO_E_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447475..458083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G00_RS02320 (V5G00_02325) - 447801..448381 (-) 581 Protein_452 superoxide dismutase -
  V5G00_RS02325 (V5G00_02330) dnaB 448545..449951 (+) 1407 WP_003704337.1 replicative DNA helicase -
  V5G00_RS02330 (V5G00_02335) pilH 450259..450924 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G00_RS02335 (V5G00_02340) pilI 450956..451564 (+) 609 WP_010357461.1 type IV pilus modification protein PilV Machinery gene
  V5G00_RS02340 (V5G00_02345) pilJ 451561..452496 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  V5G00_RS02345 (V5G00_02350) pilK 452475..453083 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G00_RS02350 (V5G00_02355) pilL 453085..453558 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  V5G00_RS02355 (V5G00_02360) - 454170..454615 (-) 446 Protein_459 AzlC family ABC transporter permease -
  V5G00_RS02360 (V5G00_02365) dut 454781..455233 (+) 453 WP_003690909.1 dUTP diphosphatase -
  V5G00_RS02365 (V5G00_02370) dapC 455311..456498 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  V5G00_RS02370 (V5G00_02375) yaaA 456654..457433 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22023.05 Da        Isoelectric Point: 7.5810

>NTDB_id=936986 V5G00_RS02345 WP_003690900.1 452475..453083(+) (pilK) [Neisseria gonorrhoeae strain WHO_E_2024]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=936986 V5G00_RS02345 WP_003690900.1 452475..453083(+) (pilK) [Neisseria gonorrhoeae strain WHO_E_2024]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

89.163

100

0.896