Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R8620_RS06765 Genome accession   NZ_AP028369
Coordinates   1312482..1313489 (+) Length   335 a.a.
NCBI ID   WP_052804836.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1307482..1318489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS06750 (B10666_13410) - 1309149..1311416 (-) 2268 WP_052804837.1 autotransporter outer membrane beta-barrel domain-containing protein -
  R8620_RS06760 (B10666_13420) - 1311981..1312391 (-) 411 WP_002783915.1 hypothetical protein -
  R8620_RS06765 (B10666_13430) ruvB 1312482..1313489 (+) 1008 WP_052804836.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R8620_RS06770 (B10666_13440) amaA 1313493..1314536 (+) 1044 WP_002862038.1 AI-2E family transporter -
  R8620_RS06775 (B10666_13450) fumC 1314565..1315956 (-) 1392 WP_002854099.1 class II fumarate hydratase -
  R8620_RS06780 (B10666_13460) glmS 1316092..1317888 (-) 1797 WP_052804835.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37333.90 Da        Isoelectric Point: 5.0873

>NTDB_id=93696 R8620_RS06765 WP_052804836.1 1312482..1313489(+) (ruvB) [Campylobacter jejuni strain BCH-10666]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKHSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=93696 R8620_RS06765 WP_052804836.1 1312482..1313489(+) (ruvB) [Campylobacter jejuni strain BCH-10666]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCATTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAGCTGCAGCTAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGAGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAACATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCTGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCTGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCTTTAAATTCTTTAGGGGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGCGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGCGCCTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.162

99.701

0.69
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Streptococcus pneumoniae TIGR4

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae R6

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae D39

48.328

98.209

0.475
  ruvB Synechocystis sp. PCC 6803

49.221

95.821

0.472

Multiple sequence alignment