Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACEPMZ_RS03490 Genome accession   NZ_CP168739
Coordinates   734553..734996 (+) Length   147 a.a.
NCBI ID   WP_071615340.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN0320     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 729553..739996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMZ_RS03465 (ACEPMZ_03465) - 729658..730506 (-) 849 WP_354536120.1 YgcG family protein -
  ACEPMZ_RS03470 (ACEPMZ_03470) - 730519..731145 (-) 627 WP_016723449.1 LemA family protein -
  ACEPMZ_RS03475 (ACEPMZ_03475) dapA 731526..732440 (+) 915 WP_028852677.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACEPMZ_RS03480 (ACEPMZ_03480) hemL 732543..733844 (-) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACEPMZ_RS03485 (ACEPMZ_03485) - 734056..734238 (+) 183 WP_003261842.1 rubredoxin -
  ACEPMZ_RS03490 (ACEPMZ_03490) pilG 734553..734996 (+) 444 WP_071615340.1 response regulator Regulator
  ACEPMZ_RS03495 (ACEPMZ_03495) pilH 735028..735396 (+) 369 WP_003269243.1 response regulator Machinery gene
  ACEPMZ_RS03500 (ACEPMZ_03500) - 735455..736000 (+) 546 WP_011000625.1 chemotaxis protein CheW -
  ACEPMZ_RS03505 (ACEPMZ_03505) - 736246..738477 (+) 2232 WP_405125357.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15807.37 Da        Isoelectric Point: 8.2887

>NTDB_id=936947 ACEPMZ_RS03490 WP_071615340.1 734553..734996(+) (pilG) [Ralstonia pseudosolanacearum strain RUN0320]
MQSARVEQLTNSQPLASSLAGRKVLVIDDSSTIRRTAQIFLSKVDCQVVLAEDGFDALAKLGDFKPDIVFCDILMPKLDG
YLTCSLIKKSPKFHATPVVMLSSRDGVFDRARGKLVGAVDHLAKPFSREALLEAVQAHLPAAAGAAQ

Nucleotide


Download         Length: 444 bp        

>NTDB_id=936947 ACEPMZ_RS03490 WP_071615340.1 734553..734996(+) (pilG) [Ralstonia pseudosolanacearum strain RUN0320]
ATGCAATCCGCGCGGGTGGAACAACTGACCAATTCCCAACCGCTGGCGAGTTCGCTTGCCGGCCGTAAAGTGCTGGTGAT
CGACGATTCCAGTACCATCCGCCGTACCGCGCAGATTTTCCTGTCCAAGGTCGATTGCCAGGTCGTGCTGGCCGAAGACG
GGTTCGATGCGCTGGCCAAGCTGGGTGACTTCAAGCCGGACATCGTCTTTTGCGACATCCTGATGCCCAAGCTGGACGGT
TACCTGACCTGCTCACTGATCAAGAAAAGCCCGAAGTTTCATGCCACGCCCGTGGTCATGCTGTCGTCGCGCGACGGGGT
GTTCGACCGCGCGCGCGGCAAGCTGGTCGGGGCGGTGGACCACCTTGCCAAGCCTTTCTCGCGGGAAGCGCTGCTGGAGG
CGGTCCAGGCGCATCTGCCGGCAGCCGCTGGCGCCGCGCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(24-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

54.622

80.952

0.442